Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01410 223 / 6e-72 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) AT1G24090 193 / 2e-59 RNase H family protein (.1) AT5G51080 168 / 6e-51 RNase H family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032166 [exp] 406 / 7e-144 AT3G01410 214 / 2e-68 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1.2) Lus10033508 [exp] 210 / 7e-66 AT1G24090 283 / 3e-93 RNase H family protein (.1) Lus10020869 [exp] 209 / 2e-65 AT1G24090 297 / 8e-99 RNase H family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0219 [flax] [poplar] RNase_H PF00075 [flax] [poplar] RNase_H RNase H CL0219 [flax] [poplar] PF01693 [flax] [poplar] Cauli_VI Caulimovirus viroplasmin
Representative CDS sequence Show only first row Show all	>Lus10014521 pacid=23170952 polypeptide=Lus10014521 locus=Lus10014521.g ID=Lus10014521.BGIv1.0 annot-version=v1.0 ATGGAGCGGGAGAGGGACGCTTTCTACGTTGTACGGAAAGGCGATATGATCGGCGTCTACAGGAGCTACCCTGACTGTCTATCTCAAGTTTCCGATCCTT CAGTAAGTGTGTTCAAAGGGTATGGCTTAACCAGGGCGGCTGAGCAATTCCTTGTCTCTCATGGGATTGCAAATGCCGCTTACTCCCTCAGTGTTTCCAA TGTTCATAACAATCTGTTTGGGAAACTTGAGCCTTGCCGTGTTCAGCCACCAGCTGCAAACCATCGGTCTTCCGCAAACAGATCTCAGGAGACACAGACT GTGCATACGTGTGGGATTGCGATTGTGGAGAACTCCCAAAACAAGTATCCGAGATTAGAGAACAGCAAAAGCCGCGAAGAAGCTCCAATCATGGCAAGGT GTGGATATGCGGTTGTGGTGGAGGACCCCCAAAGCAAGTATCCGAGGTCAGAGTACAGTGACGGCAGTAAAGCAGTTGCCGTCAACACAACGCCAGCAAG TCTTTATTTTGATGGCGCTTCAAAAGGAAATCCAGGACCAGCTGGTGCAGGCGCTGTTCTGTACTCTCCTGATGGAAGAATGGCGTGGCGATTATGTGAA GGCGTAGGGATAGCAACAAATAATGTTGCTGAATATCGAGGACTGCTTCTGGGATTGAAGCAAGCGTTAAAGAAAGGATTCGTAGATATTAGTGTCCAAG GGGATTCTAATCTTGTCTGTATGCAGATTCAGGGCATCTGGAAGGTGAAAAACAAGAACCTGGCGAACGTGGGTCAGGAAGCCAGAGATCTTAAGGACAG GTTTCGTACTTTCCAGATCAGACATATTCCAAGGGAATATAACTCTGAAGCCGATGCACTAGCGAACCAGGCTGTTCTACTTAGGGGTTAG
AA sequence Show only first row Show all	>Lus10014521 pacid=23170952 polypeptide=Lus10014521 locus=Lus10014521.g ID=Lus10014521.BGIv1.0 annot-version=v1.0 MERERDAFYVVRKGDMIGVYRSYPDCLSQVSDPSVSVFKGYGLTRAAEQFLVSHGIANAAYSLSVSNVHNNLFGKLEPCRVQPPAANHRSSANRSQETQT VHTCGIAIVENSQNKYPRLENSKSREEAPIMARCGYAVVVEDPQSKYPRSEYSDGSKAVAVNTTPASLYFDGASKGNPGPAGAGAVLYSPDGRMAWRLCE GVGIATNNVAEYRGLLLGLKQALKKGFVDISVQGDSNLVCMQIQGIWKVKNKNLANVGQEARDLKDRFRTFQIRHIPREYNSEADALANQAVLLRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	0	1
AT3G48425			DNAse I-like superfamily prote...		Lus10043333 [exp]	1.0	0.8801
AT3G63240			DNAse I-like superfamily prote...		Lus10014684 [exp]	2.4	0.8588
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	2.8	0.8603
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	5.0	0.8438
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Lus10008101 [exp]	7.3	0.8209
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Lus10008855 [exp]	8.7	0.8447
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Lus10037635 [exp]	9.2	0.7636
AT1G61470			Polynucleotidyl transferase, r...		Lus10001651 [exp]	9.8	0.7802
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	10.1	0.8338
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	10.6	0.8284

Compare expression of checked genes

Lus10014521 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.