Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40160 305 / 8e-103 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT5G66055 175 / 7e-51 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT2G03430 84 / 1e-18 Ankyrin repeat family protein (.1) AT3G04710 69 / 9e-13 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G25600 68 / 2e-12 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G28840 68 / 3e-12 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT2G14255 68 / 3e-12 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G14230 67 / 7e-12 unknown protein AT4G27780 65 / 1e-11 ACBP2 acyl-CoA binding protein 2 (.1) AT3G09890 64 / 1e-11 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032165 [exp] 518 / 0 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10041853 [exp] 179 / 4e-52 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10028399 [exp] 125 / 4e-32 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10023911 [exp] 79 / 6e-17 AT3G09890 219 / 6e-73 Ankyrin repeat family protein (.1.2) Lus10021508 [exp] 74 / 2e-15 AT3G09890 209 / 5e-69 Ankyrin repeat family protein (.1.2) Lus10014410 [exp] 72 / 2e-14 AT3G09890 217 / 5e-72 Ankyrin repeat family protein (.1.2) Lus10022609 [exp] 68 / 1e-13 AT3G09890 181 / 1e-58 Ankyrin repeat family protein (.1.2) Lus10036968 [exp] 67 / 3e-13 AT2G03430 216 / 7e-72 Ankyrin repeat family protein (.1) Lus10002621 [exp] 70 / 5e-13 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G295200 [exp] 308 / 4e-104 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 179 / 2e-52 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.007G060400 [exp] 172 / 5e-50 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.010G161300 [exp] 82 / 7e-18 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.016G097900 [exp] 71 / 4e-14 AT3G09890 214 / 5e-71 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 71 / 8e-14 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.003G103400 [exp] 70 / 1e-13 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G238800 [exp] 71 / 2e-13 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.010G185200 [exp] 71 / 2e-13 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.013G062000 [exp] 71 / 2e-13 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10014522 pacid=23170947 polypeptide=Lus10014522 locus=Lus10014522.g ID=Lus10014522.BGIv1.0 annot-version=v1.0 ATGGTGCTGTCAGGAGTTAAAATTGCTCCCACTCCTCTGCTTGGATATCATGGGGTTCTTTGTTCTTCTCCAGTTCTAAGACCGACTCATCGGATCAATC TCCATCAATTTTCTCGAAATGGGAGATTCGCGTTTCATCCAGAGCAGAAATGGCCAGCTACGTTGACAGCTGGTGTGGCTGACTCAAATGAGGCGTTTTC CTTTGAGACACACCATGGAGTTTGGGAAGATCCTTGTGATGAAACTGATAACAATTATGACGACAATGATGAAGATGAACAAAATGAACAAGTGGACTCC GAATCCGATGACGAAGGTGATTCAAGAGGAAGATCTGATGCTCTAATCACTAACACTACTGCTTCAGACACCTATGACGAAGATCTTGCAAAAGAGGTTG AACAGCTTTTAACACCTGGAGAAAGAGCCATTCTAGAGCAACATCCAACTCCTAATCTTGCCAAGATATCAACTGAAAAATGGCAGCCATTACAGACGCT TGCACTGTCAGGTCAGATAAAGCATATGGACAAACTGGTTAACGGCGGACTCGACATCGATAGCCTCGATAAGGATGGCCGAACTGCTCTCCACACTGCC GTTATCGGTAAGAAAGAGGCTGTAATCAGTCATCTCCTCCGAAAAGGTGCGAGTCCACATATTAGAGACAAGGATGGAGCTACCCCTCTGCATTATGCTG CCCAAGTTGGAGCTTTGCAGACTGTGAAATTGTTGGTCAAATACAAAGTTGACGTCAATGTGACAGATGAAGAAGGGTGGACGCCATTGCACATAGCTGT GCAGAGTAGAAACCGGGATATAGCGAAAGTGCTGCTGGTGAATGGTGCAGACGAAACAAGAAGAAACAAGAATGGAACAACAGCAATGGATATTGCGTTA CGATATGGCAGAGACTTCAAGTCTTATGACCTTGCCAAGCTGCTTAAGGTTATACCTGGGAACAGAAGTCCGCAGAGGAGGATATGGTTCGAACGCGGGG AAGCCTATGATACTTGCTTACTTTACGAGTTCGGTGTAAGTCATTGA
AA sequence Show only first row Show all	>Lus10014522 pacid=23170947 polypeptide=Lus10014522 locus=Lus10014522.g ID=Lus10014522.BGIv1.0 annot-version=v1.0 MVLSGVKIAPTPLLGYHGVLCSSPVLRPTHRINLHQFSRNGRFAFHPEQKWPATLTAGVADSNEAFSFETHHGVWEDPCDETDNNYDDNDEDEQNEQVDS ESDDEGDSRGRSDALITNTTASDTYDEDLAKEVEQLLTPGERAILEQHPTPNLAKISTEKWQPLQTLALSGQIKHMDKLVNGGLDIDSLDKDGRTALHTA VIGKKEAVISHLLRKGASPHIRDKDGATPLHYAAQVGALQTVKLLVKYKVDVNVTDEEGWTPLHIAVQSRNRDIAKVLLVNGADETRRNKNGTTAMDIAL RYGRDFKSYDLAKLLKVIPGNRSPQRRIWFERGEAYDTCLLYEFGVSH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40160		EMB139, EMB506	embryo defective 506, EMBRYO D...		Lus10014522 [exp]	0	1
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	4.8	0.8875
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10022387 [exp]	5.7	0.8559
AT3G57810			Cysteine proteinases superfami...		Lus10020438 [exp]	8.1	0.8872
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	10.2	0.8437
AT5G51140			Pseudouridine synthase family ...		Lus10022437 [exp]	11.0	0.8595
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	13.4	0.8494
AT1G60600		ABC4	ABERRANT CHLOROPLAST DEVELOPME...		Lus10032658 [exp]	15.5	0.8823
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	16.1	0.8440
AT5G45170			Haloacid dehalogenase-like hyd...		Lus10040631 [exp]	16.4	0.8459
AT5G43990		SDG18, SUVR2	SET DOMAIN PROTEIN 18, SET-dom...		Lus10022878 [exp]	16.5	0.8150

Compare expression of checked genes

Lus10014522 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.