Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40190 238 / 7e-81 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) AT3G28140 211 / 4e-70 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032164 [exp] 353 / 2e-126 AT5G40190 254 / 3e-87 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10039477 [exp] 312 / 4e-110 AT5G40190 266 / 3e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Lus10039437 [exp] 310 / 2e-109 AT5G40190 265 / 8e-92 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G350300 [exp] 292 / 2e-102 AT5G40190 264 / 3e-91 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1) Potri.017G073800 [exp] 270 / 9e-94 AT5G40190 247 / 1e-84 RNA ligase/cyclic nucleotide phosphodiesterase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014523 pacid=23170885 polypeptide=Lus10014523 locus=Lus10014523.g ID=Lus10014523.BGIv1.0 annot-version=v1.0 ATGTCACAGGGCTACGCAATCGAGCTCTACTTCGACCCAGCGCTGGAGAACCAGGTCTTGAAAGCCTGGAACGTGCTAGCTCGCCGCCAAATCAGCACCC AACTCATCGAAATCGAGTCTCGTCCTCACATAACCCTCTATTCAACCCCTTACAACACCATCGAACCCAGCATTAATAAGCTGGAATCCGTGTTGAGAAC CTTTGCTTCCAAGCAGGAACCTCTGCCCTTGTCTCTATCAACGATCGGCACTTTCCCAAGTGACGGCAATGTCCTCTTCCTATCCCCGACGCCTTCCCTC TCTTTGCTTCAGTTCCATTCCCAGCTATGCGACGCGATGAAGAAGGAAGGCATCGAGATGGGCGATGAGTATCGCCCCGACAGCTGGATTCCTTACTGTG CTGTAGCTCAGGACGTTCCAAGGGCAAGAATGGGGGAGGCATTTTGTGTTGTTAGAGACTTGAAGTTGCCTGTTTCTGGGTATGCAATGGATATCGGAGT TGTGGAGTTCTCTCCAGTCCGTGAGTTGTGCTCATTTGTGCTTGGTAACGCTTTTGAATGA
AA sequence Show only first row Show all	>Lus10014523 pacid=23170885 polypeptide=Lus10014523 locus=Lus10014523.g ID=Lus10014523.BGIv1.0 annot-version=v1.0 MSQGYAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLYSTPYNTIEPSINKLESVLRTFASKQEPLPLSLSTIGTFPSDGNVLFLSPTPSL SLLQFHSQLCDAMKKEGIEMGDEYRPDSWIPYCAVAQDVPRARMGEAFCVVRDLKLPVSGYAMDIGVVEFSPVRELCSFVLGNAFE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10014523 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	4.2	0.8400
AT5G45190			Cyclin family protein (.1.2)		Lus10040640 [exp]	4.7	0.7715
AT3G58630	Trihelix		sequence-specific DNA binding ...		Lus10015281 [exp]	4.9	0.8020
AT3G58030			RING/U-box superfamily protein...		Lus10004162 [exp]	6.7	0.7939
AT5G67190	AP2_ERF	DEAR2	DREB and EAR motif protein 2 (...		Lus10009373 [exp]	7.7	0.8131
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	8.1	0.8336
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	13.6	0.7757
AT5G62030			diphthamide synthesis DPH2 fam...		Lus10039108 [exp]	14.0	0.7630
AT1G16000			unknown protein		Lus10011478 [exp]	17.5	0.7588
AT3G01570			Oleosin family protein (.1)		Lus10032127 [exp]	18.4	0.6869

Compare expression of checked genes

Lus10014523 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.