Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 302 / 2e-93 Leucine-rich repeat protein kinase family protein (.1) AT5G05160 296 / 2e-91 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 291 / 7e-89 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 276 / 1e-83 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 265 / 4e-79 RKL1 receptor-like kinase 1 (.1) AT3G17840 257 / 2e-76 RLK902 receptor-like kinase 902 (.1) AT1G60630 257 / 3e-76 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 253 / 6e-75 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 251 / 2e-74 Leucine-rich repeat protein kinase family protein (.1) AT5G16590 250 / 5e-74 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032162 [exp] 1178 / 0 AT2G26730 321 / 1e-100 Leucine-rich repeat protein kinase family protein (.1) Lus10039422 [exp] 743 / 0 AT5G58300 306 / 3e-95 Leucine-rich repeat protein kinase family protein (.1.2) Lus10039483 [exp] 557 / 0 AT5G58300 241 / 5e-71 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002360 [exp] 510 / 9e-174 AT2G26730 337 / 1e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10042135 [exp] 510 / 1e-173 AT2G26730 335 / 4e-106 Leucine-rich repeat protein kinase family protein (.1) Lus10021673 [exp] 303 / 1e-93 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 297 / 3e-91 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10031350 [exp] 288 / 2e-88 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10017996 [exp] 285 / 7e-87 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G073500 [exp] 520 / 7e-178 AT2G26730 341 / 1e-108 Leucine-rich repeat protein kinase family protein (.1) Potri.012G078100 [exp] 512 / 6e-175 AT2G26730 215 / 3e-61 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 306 / 5e-95 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 305 / 1e-94 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 304 / 2e-94 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 306 / 3e-94 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 303 / 6e-94 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.010G121700 [exp] 284 / 4e-86 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.017G130600 [exp] 281 / 1e-85 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 279 / 1e-84 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10014525 pacid=23170916 polypeptide=Lus10014525 locus=Lus10014525.g ID=Lus10014525.BGIv1.0 annot-version=v1.0 ATGAATCGACTTCCGGTCTACCTACTCCTAGTCTCTTTTCTTCTCCTTCTCCACAGCGGAAATGGAATTTCTGCGGCGGTGGAGGATGGAGTGAAACACT CGCTCATCGGCTTTCTGGCGAAGCTGAACGGAAGCACGACTGGAAAACCTGATGCGAGTTTCGGTTGGGTCGAATCGACTGATCCTTGCCTGAATTCCTG GCTAGGAATCTCCTGCGACTTTGCCGACAAGTCTATCGCGAGGATCGATGTTTCAGGACTCGATCTGTCTGGTTCGTTCGATCCTTCTTCCATTTGCAAT TCGGTTTCGTCTCTCACCCTCATCAACCTGCAGAAGAATCAACTCGCTGGCGAAATCCCGGCCGAGATTTCGAACTGTACAAACCTGACTCACTTGCTCA TCGGTAAGAACAATTTCTCCGGTCGAATTCCAGACTCTATCGTCGAGCTGAAGAATCTCAACAAACTCGATCTCTCCCACAACAGATTCTCCGGAAACTT ACCGGATTTGACCGGACTTCCAGGCCTGACGGTTTTCACTGCTCAGGGGAATCATTTCACTGGTCAAGTACCTTCGTTCAACTTCTCGAAGCTCGAAAAA TTCGACGTGTCACACAACAACTTCAGCGGCCAGATTCCTGACGTGAAGCGGAAATTCTCTCAGTACAGCTTTCTGGATAATCCTGAACTTTGCGGCCCGC CTTTACCAACGCCATGCCTGTCCTCGAACATCGTCAGCTCGGAAAACGATCATCATCAGGTCGATGACAAGAAGACGAAAAGCGACGAGAGAGATCAGAT CTTGATGTATTCCGGATACACAATTGTCGGATTCGGAGTAGTCATCAGCTTTTTCATGTTTTGGATGTGCAAGAGAAAGCGCAGTGGTAGCGTGCGGAAC AAGAAAGGTGATTTTGAAAGCAGAGTTGCTTCCGTAGACGATAGTTTCCTGAGCAAGGAAAGCCCAAGCCATGTGAAAGAAAGCAGATCCGAGTACTCAG AGATGACCGGTGAAAGTGGAGGGTTAGTTTCGAGTTCGCTGGTGGTTCTGACGAGTCCTGTGGTGAGCGGGCTGGATTTCGAGGAGTTGTTGAAGGCTCC TGCGGAGTTGCTGGGGAGAGGGAAGCATGGGAGTCTGTATAAGGTGAATTTGAACAGTGGGATGACTGTGGTTGTGAAGAGGGTTAAAGATTGGCCGATT TCTTCTGGTGATTTCAAGCAGAGGATGCAGAGAGTTCATCAAGCTAGCCATCCTAACGTGTTGCCTACGCTTGCGTTTTACTGTTCTGGACATGAGAAGC TGCTGGTTTATGGGTATCAGGAGAATGGAAGCCTCTTCAGATATCTCCATGGAACAAAGATGGGACAAGCATTCGACTGGGGAAGCAGGCTGACCGTCGC AGCAACAATCGCCGAAGCTCTATCCTTCATGCACAAGAACCTTTACGACGATTCGATCAGCCACGGAAACCTGAAATCCTCCAACATACTCCTCAACCAA AACCTGGAACCCTGCATCAGCGAGTACGGTCTGATGCCTTCTACCAATATCACTGCCGACGCTACTGAATCCTCCTCCTCCTCTTCAGAAGGCAACAACA GCTTCAGCTTCAGCGAGGTGAAGAAGCCTATGAATAAGAAGAAATCCTCCCTCCTGGCTTCGGATGCAGCGTTCAAAGCAGACGTGTACGGGTTCGGAGT CATACTTCTCGAGCTGCTGACAGGGAAGACGGTGCAGAACAACGGTGGCATGAGCTTGCCGACGTGGGTCCAGGCCGTGGTTCGAGAAGAATGGACGGTC GAGGTTTTCGATAAGCATCTTATATCGGAAGGTGCGAGTGAGGAAAGGATGGTGAATGTGCTTCAGGTTGCTATCAAGTGTACGAGTCAGAGTGCTGGTG ATCGGCCTACCATTAAGCAGACTGCGGTCATGATTAATGCGATTCGAGATGAAGAAGAGAGGTCGATAACAACTAGTTATTCGAGATAA
AA sequence Show only first row Show all	>Lus10014525 pacid=23170916 polypeptide=Lus10014525 locus=Lus10014525.g ID=Lus10014525.BGIv1.0 annot-version=v1.0 MNRLPVYLLLVSFLLLLHSGNGISAAVEDGVKHSLIGFLAKLNGSTTGKPDASFGWVESTDPCLNSWLGISCDFADKSIARIDVSGLDLSGSFDPSSICN SVSSLTLINLQKNQLAGEIPAEISNCTNLTHLLIGKNNFSGRIPDSIVELKNLNKLDLSHNRFSGNLPDLTGLPGLTVFTAQGNHFTGQVPSFNFSKLEK FDVSHNNFSGQIPDVKRKFSQYSFLDNPELCGPPLPTPCLSSNIVSSENDHHQVDDKKTKSDERDQILMYSGYTIVGFGVVISFFMFWMCKRKRSGSVRN KKGDFESRVASVDDSFLSKESPSHVKESRSEYSEMTGESGGLVSSSLVVLTSPVVSGLDFEELLKAPAELLGRGKHGSLYKVNLNSGMTVVVKRVKDWPI SSGDFKQRMQRVHQASHPNVLPTLAFYCSGHEKLLVYGYQENGSLFRYLHGTKMGQAFDWGSRLTVAATIAEALSFMHKNLYDDSISHGNLKSSNILLNQ NLEPCISEYGLMPSTNITADATESSSSSSEGNNSFSFSEVKKPMNKKKSSLLASDAAFKADVYGFGVILLELLTGKTVQNNGGMSLPTWVQAVVREEWTV EVFDKHLISEGASEERMVNVLQVAIKCTSQSAGDRPTIKQTAVMINAIRDEEERSITTSYSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26730			Leucine-rich repeat protein ki...		Lus10014525 [exp]	0	1
AT4G37070		AtPLAIVA, PLP1,...	phospholipase A IVA, Acyl tran...		Lus10009340 [exp]	6.2	0.8239
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Lus10035921 [exp]	30.8	0.8164
AT3G61930			unknown protein		Lus10030203 [exp]	59.2	0.7960
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Lus10033040 [exp]	101.1	0.7749
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10009115 [exp]	111.1	0.7672
AT5G63180			Pectin lyase-like superfamily ...		Lus10014887 [exp]	114.1	0.7597
AT3G14240			Subtilase family protein (.1)		Lus10024814 [exp]	125.2	0.7703
					Lus10004843 [exp]	135.4	0.7631
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Lus10006505 [exp]	163.2	0.7520
AT3G61930			unknown protein		Lus10002685 [exp]	182.1	0.7276

Compare expression of checked genes

Lus10014525 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.