Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40250 355 / 3e-121 RING/U-box superfamily protein (.1) AT1G23980 270 / 4e-88 RING/U-box superfamily protein (.1) AT2G18650 187 / 2e-55 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT3G48030 155 / 5e-44 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein (.1) AT5G57750 147 / 2e-42 RING/U-box superfamily protein (.1) AT4G30400 147 / 8e-40 RING/U-box superfamily protein (.1) AT4G40070 102 / 2e-24 RING/U-box superfamily protein (.1) AT1G72220 99 / 1e-22 RING/U-box superfamily protein (.1) AT5G17600 94 / 3e-21 RING/U-box superfamily protein (.1) AT1G72200 93 / 1e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032161 [exp] 605 / 0 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1) Lus10029178 [exp] 287 / 9e-95 AT5G40250 297 / 1e-98 RING/U-box superfamily protein (.1) Lus10012987 [exp] 266 / 8e-87 AT5G40250 302 / 7e-101 RING/U-box superfamily protein (.1) Lus10015502 [exp] 175 / 6e-51 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10019973 [exp] 171 / 2e-49 AT4G30400 252 / 4e-80 RING/U-box superfamily protein (.1) Lus10015901 [exp] 105 / 1e-25 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10012745 [exp] 96 / 6e-22 AT4G33565 168 / 4e-49 RING/U-box superfamily protein (.1) Lus10012975 [exp] 95 / 2e-21 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10037264 [exp] 94 / 5e-21 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072300 [exp] 384 / 1e-132 AT5G40250 372 / 7e-128 RING/U-box superfamily protein (.1) Potri.001G351466 [exp] 364 / 8e-125 AT5G40250 355 / 2e-121 RING/U-box superfamily protein (.1) Potri.012G078200 [exp] 261 / 2e-84 AT5G40250 241 / 1e-76 RING/U-box superfamily protein (.1) Potri.015G073600 [exp] 247 / 5e-79 AT5G40250 259 / 1e-83 RING/U-box superfamily protein (.1) Potri.018G098500 [exp] 184 / 1e-53 AT4G30400 339 / 7e-112 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 158 / 9e-44 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 104 / 6e-25 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 103 / 1e-24 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 100 / 2e-23 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 97 / 2e-22 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10014526 pacid=23170902 polypeptide=Lus10014526 locus=Lus10014526.g ID=Lus10014526.BGIv1.0 annot-version=v1.0 ATGGCGTGGATTCATTATCAAATCCAGCAAAAAGATGGATATTTGACATACACACCTCCCCCTCCTTCCATTTATCCATATACAGATGCTTTCCATAAAG AATCAGCAATACCCTCTACTTCCACTTCGTCTTCGTCATCTTCTGGTGCTAGAATCAGCCCGGCTGTACTGTTCATCATAGTAATTCTTGCTGTACTTTT TTTCGTCTCTGGCTTGCTTCACTTGCTTGTTAGATTCCTAGTAAAGCACCCGTCTTCCTCCGGTGGTGGTTCTAATCACTCGAATAGGGACAACCCAGAA TTGTCAAGCTCGGATGCTCTTCAAAGGCAGCTCCATCAGCTTTTTAACCTCCATGATTCTGGTCTGGATCAAGCCTTTATAGATGCGCTGCCTGTTTTCC AGTACAAGGAGATTGTAGGAGGTCTGAAGGAGCCTTTTGATTGTGCTGTTTGTTTGTGTGAGTTCTCGGAGAAGGATAAGCTGAGACTGCTTCCTATTTG CAGCCATGCTTTCCATATCTCTTGTATCGACACATGGCTGCTGTCGAACTCTACGTGCCCGCTGTGCAGGGCTACTCTATTCAATCCCGGGTTTGGAAAC CCCATGTTTGATTATGACGATTTCGGAGAGGATGAGGAATGTTGTCCGGGGAGTAATGTAGAGAACAAGGTCCCTTCTTCACAGAAAACTGTGGAGATTG AGGAAGTTGTTGTGAAAAAGGGAGTGGTGCCTGTTCGGCTTGGTAAATTCAGGAGATTAGATGGTGGTGGTGGTGGTGAGGCAGGTGGAGAAACTAGTAG CAGTAATTTAGATGCACGGAGATGTTTCTCGATGGGTTCGTATCAATATGTGCTAGCCAAGTCGGATCTCAGGGTTCCTTTGAGCAATGACAGGCAAGGC GGCCGTGAAATAAAGCTCACTATTGAGAGAGAAGATGGTGAGAAGTCCTCAATTGACAAGGACTCTGAAGGTAAGAAGGTTTCTAAAGGTGAGAGCTACT CTGTCTCCAAGATTTGGCTTTGGTCCAAGAAGGGTAAGTCTTCAGATGTTAATATGGGTATGCCATCTTCACTTAGCGGGGATTTGCCGTGGATGAACAG AGCGCAAGAGAAATGA
AA sequence Show only first row Show all	>Lus10014526 pacid=23170902 polypeptide=Lus10014526 locus=Lus10014526.g ID=Lus10014526.BGIv1.0 annot-version=v1.0 MAWIHYQIQQKDGYLTYTPPPPSIYPYTDAFHKESAIPSTSTSSSSSSGARISPAVLFIIVILAVLFFVSGLLHLLVRFLVKHPSSSGGGSNHSNRDNPE LSSSDALQRQLHQLFNLHDSGLDQAFIDALPVFQYKEIVGGLKEPFDCAVCLCEFSEKDKLRLLPICSHAFHISCIDTWLLSNSTCPLCRATLFNPGFGN PMFDYDDFGEDEECCPGSNVENKVPSSQKTVEIEEVVVKKGVVPVRLGKFRRLDGGGGGEAGGETSSSNLDARRCFSMGSYQYVLAKSDLRVPLSNDRQG GREIKLTIEREDGEKSSIDKDSEGKKVSKGESYSVSKIWLWSKKGKSSDVNMGMPSSLSGDLPWMNRAQEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	0	1
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	1.7	0.8080
AT4G38690			PLC-like phosphodiesterases su...		Lus10034483 [exp]	2.0	0.8270
AT3G24100			Uncharacterised protein family...		Lus10007122 [exp]	2.6	0.7998
					Lus10017454 [exp]	2.8	0.8301
AT2G20230			Tetraspanin family protein (.1...		Lus10011910 [exp]	4.0	0.8018
AT2G44060			Late embryogenesis abundant pr...		Lus10008337 [exp]	4.9	0.7925
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	9.8	0.7567
AT5G40250			RING/U-box superfamily protein...		Lus10032161 [exp]	11.4	0.8005
AT4G29130		GIN2, ATHXK1	GLUCOSE INSENSITIVE 2, ARABIDO...		Lus10038287 [exp]	12.7	0.7632
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10038689 [exp]	17.7	0.7710

Compare expression of checked genes

Lus10014526 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.