Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01430 51 / 2e-08 unknown protein AT5G14890 47 / 2e-06 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032160 [exp] 119 / 9e-35 AT5G14890 82 / 1e-19 NHL domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101300 [exp] 70 / 8e-16 AT5G14890 125 / 6e-34 NHL domain-containing protein (.1) Potri.001G132100 [exp] 61 / 4e-12 AT3G01430 122 / 7e-36 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014527 pacid=23170922 polypeptide=Lus10014527 locus=Lus10014527.g ID=Lus10014527.BGIv1.0 annot-version=v1.0 ATGTCCCAACCTCCACGCGCCGCCCCTTTCTACGACGACGACGACGACTACATCCACGATCCCGCTTTCCCACCAACCACCCAATCCACGATCCCGCTTT CGCCCGCCGCGGCTGCTGCTGCTTCTGCTTCCCCAACCTCCTCAGCAAGAAACACTCAGGAGGAGGAGGGGCGGCGGGGCCATCCGCCGCGTTCTGGCAG CGGATCAGGCCTACTACTGTCGATCAGTCACCGCCGTGGTGGCGGAGGGGGTGGAAGAAGGAGGAAGAGGAGAGGATATGGGAAATTCCACTACGATGCT ACCAGCTACGCTCTCAATTTCGACGATGGCCCCTTGGACGGCGGCGATTCCTACTACCACGACGACGATCTCCACGGCAGGGGATTCTCCGACCGCTATT CCCTCCCGCCGTCGGCTAAATGTTCCATGGATTTCGATCATGATTTAAATTTCAGCTCGTGA
AA sequence Show only first row Show all	>Lus10014527 pacid=23170922 polypeptide=Lus10014527 locus=Lus10014527.g ID=Lus10014527.BGIv1.0 annot-version=v1.0 MSQPPRAAPFYDDDDDYIHDPAFPPTTQSTIPLSPAAAAAASASPTSSARNTQEEEGRRGHPPRSGSGSGLLLSISHRRGGGGGGRRRKRRGYGKFHYDA TSYALNFDDGPLDGGDSYYHDDDLHGRGFSDRYSLPPSAKCSMDFDHDLNFSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01430			unknown protein		Lus10014527 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10011979 [exp]	1.7	0.9797
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10008291 [exp]	2.2	0.9755
AT3G56200			Transmembrane amino acid trans...		Lus10028165 [exp]	3.5	0.9788
AT5G14890			NHL domain-containing protein ...		Lus10032160 [exp]	4.6	0.9606
AT5G05130			DNA/RNA helicase protein (.1)		Lus10027296 [exp]	4.7	0.9669
					Lus10037270 [exp]	6.5	0.9493
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Lus10024038 [exp]	6.8	0.9602
AT1G16350			Aldolase-type TIM barrel famil...		Lus10036443 [exp]	7.1	0.9672
AT1G11380			PLAC8 family protein (.1)		Lus10018410 [exp]	7.2	0.9758
AT3G48240			Octicosapeptide/Phox/Bem1p fam...		Lus10000441 [exp]	7.5	0.9714

Compare expression of checked genes

Lus10014527 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.