Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 86 / 2e-18 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT3G18960 72 / 1e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 71 / 2e-14 B3 AP2/B3-like transcriptional factor family protein (.1) AT1G49475 58 / 8e-10 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G33280 42 / 0.0005 B3 REM16 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032159 [exp] 518 / 0 AT3G18990 93 / 8e-21 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10021007 [exp] 246 / 1e-78 AT3G18990 87 / 4e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10023843 [exp] 185 / 2e-54 AT3G18990 81 / 9e-17 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10019977 [exp] 141 / 1e-40 AT3G18990 41 / 7e-05 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10040408 [exp] 129 / 7e-36 ND 41 / 8e-05 Lus10000160 [exp] 94 / 3e-23 ND / Lus10010759 [exp] 96 / 9e-22 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10015505 [exp] 93 / 2e-20 AT3G02920 231 / 8e-74 Replication protein A, subunit RPA32 (.1.2) Lus10023844 [exp] 87 / 8e-20 AT3G18990 179 / 1e-55 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 100 / 4e-23 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 86 / 5e-18 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.009G108500 [exp] 80 / 3e-16 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G230100 [exp] 80 / 5e-16 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 75 / 2e-14 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 72 / 4e-14 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 66 / 9e-12 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 56 / 6e-09 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 47 / 2e-05 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.002G129800 [exp] 45 / 5e-05 AT4G33280 159 / 9e-45 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10014528 pacid=23170930 polypeptide=Lus10014528 locus=Lus10014528.g ID=Lus10014528.BGIv1.0 annot-version=v1.0 ATGGCTTTTAATGACCTACCCAAGATTTTCTGGCAGATTATCTACCCTGAAGATCTCAAGCAAGGAAGATTGAGGCTTTCGGGGGAGTTTGTGAAGGAGT ACGGCCACCTCCTCTCCGACGAGGTGACGCTGAAAGTACGGGACGGGAAAGTTTGGAAGATCGGGCTGGCAAAGCAACTTGGCTGCCGTGAAGAGAGAAT CTGGCTCAAAGCTGGATTCGGTCGTTTCCTTGAGCACTACTCCATTGGCGTTGGTTATCTTCTCATCTTCGAGTTCCGAGGCTCGTCCAGGTTTCAGGCT TTCGTTTTCGACCTCACCGCCTGTGAGATCGTGTACCCAATCTCCTCCTCCCATGATTCCGATTCGGATTCCAATTTCGACTTCGACAACCCTGGTTTAA GGCACGGAAACAGAGGAAAAGGAGTTGTCTCCACCGCCGTCGGGGAAAATGGCGGCAATGCATCAGGCTCACGGCAGCAACGGCAACAGGGACGACCGTG TGCGGCCCTTGATATCGATGATTCTGACTCAGATTCCTCCGAATCCGATCCGGACTTCTGCAGCCCTGATTTCAGGGCCAGAAACAGAGGGAAACAAGCT GTCCCCGCTAAGAGAAACGGCGGCAATGCATCAAGCTCACGACCTCCCAATGCTGCCGGAGCATCCTTCACTGATGCAGGTAACTTCGAAAAGCTTTCAA GAACTAAGAAAAGATTGAGAACAAATTTCAAAGGAGACTCCTTTTTCTGTGTGTGTGCAGAGGAGTTATGGAGGCGAGTCGAGAGATCAACGATAATCAA AACCAAAGGGTTCCGCTCCAGGCTGGTGAATCTCCCTGAAGCAAGCCAGAGGGCAATCAGTAGAGCCTTTGATATTAGAAATCCGAAGAACCCTTCATTT CTGGTCGACATCACGACATCCCAAGCAAACTCAGGAAACATGAGCTTGCCGATAAGGATCACAGCTGATGGCTATATGAGGAAAGATTTGCAGAAGATAA TGCTGCGTGTGTTCGATGGAGAGGAGCGTATGGTGCTGGACCAGAGGGAGGTTAATCTGTTCGAGAGGAAGGGGAAAGAGAGGGGGAAGAAGTATATATG CGGGTGGATGTCATTCTGCAAGGACCATAGGTTGGTAACTGGAGACATTTGTTTGTTCGAGCTTGTCGAGCCTGAGGCTAACCTATTCGACGTTCGCAAA TTCCATGCTCGTCGTGGTTGA
AA sequence Show only first row Show all	>Lus10014528 pacid=23170930 polypeptide=Lus10014528 locus=Lus10014528.g ID=Lus10014528.BGIv1.0 annot-version=v1.0 MAFNDLPKIFWQIIYPEDLKQGRLRLSGEFVKEYGHLLSDEVTLKVRDGKVWKIGLAKQLGCREERIWLKAGFGRFLEHYSIGVGYLLIFEFRGSSRFQA FVFDLTACEIVYPISSSHDSDSDSNFDFDNPGLRHGNRGKGVVSTAVGENGGNASGSRQQRQQGRPCAALDIDDSDSDSSESDPDFCSPDFRARNRGKQA VPAKRNGGNASSSRPPNAAGASFTDAGNFEKLSRTKKRLRTNFKGDSFFCVCAEELWRRVERSTIIKTKGFRSRLVNLPEASQRAISRAFDIRNPKNPSF LVDITTSQANSGNMSLPIRITADGYMRKDLQKIMLRVFDGEERMVLDQREVNLFERKGKERGKKYICGWMSFCKDHRLVTGDICLFELVEPEANLFDVRK FHARRG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10014528 [exp]	0	1
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	1.4	0.9957
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	1.7	0.9932
AT5G63090	AS2	LOBB, LOB	Lateral organ boundaries (LOB)...		Lus10011906 [exp]	2.0	0.9936
AT1G72570	AP2_ERF		Integrase-type DNA-binding sup...		Lus10015653 [exp]	2.2	0.9916
AT3G19500	bHLH	bHLH113	basic helix-loop-helix (bHLH) ...		Lus10013874 [exp]	2.8	0.9906
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010693 [exp]	2.8	0.9924
					Lus10015654 [exp]	4.6	0.9907
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Lus10003141 [exp]	5.7	0.9750
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	6.0	0.9903
					Lus10026293 [exp]	7.7	0.9907

Compare expression of checked genes

Lus10014528 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.