Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14890 309 / 2e-97 NHL domain-containing protein (.1) AT1G70280 291 / 4e-93 NHL domain-containing protein (.1.2) AT1G23880 289 / 8e-92 NHL domain-containing protein (.1) AT3G14860 214 / 1e-63 NHL domain-containing protein (.1.2) AT1G23890 144 / 1e-39 NHL domain-containing protein (.1.2) AT1G56500 60 / 2e-09 haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032158 [exp] 687 / 0 AT1G70280 342 / 2e-113 NHL domain-containing protein (.1.2) Lus10039421 [exp] 324 / 7e-109 AT1G23880 329 / 1e-110 NHL domain-containing protein (.1) Lus10039484 [exp] 323 / 3e-105 AT1G70280 423 / 1e-143 NHL domain-containing protein (.1.2) Lus10030850 [exp] 256 / 1e-78 AT1G23880 464 / 2e-158 NHL domain-containing protein (.1) Lus10012989 [exp] 242 / 7e-74 AT1G70280 538 / 0.0 NHL domain-containing protein (.1.2) Lus10029176 [exp] 242 / 8e-74 AT1G70280 540 / 0.0 NHL domain-containing protein (.1.2) Lus10030849 [exp] 134 / 6e-35 AT1G23890 271 / 7e-88 NHL domain-containing protein (.1.2) Lus10030637 [exp] 96 / 3e-21 AT1G70280 244 / 3e-76 NHL domain-containing protein (.1.2) Lus10030639 [exp] 81 / 2e-16 AT1G23890 191 / 2e-57 NHL domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G092200 [exp] 403 / 1e-136 AT1G70280 465 / 3e-160 NHL domain-containing protein (.1.2) Potri.008G147700 [exp] 341 / 1e-112 AT1G70280 568 / 0.0 NHL domain-containing protein (.1.2) Potri.010G094200 [exp] 332 / 4e-109 AT1G70280 511 / 5e-179 NHL domain-containing protein (.1.2) Potri.001G387500 [exp] 213 / 2e-62 AT3G14860 534 / 0.0 NHL domain-containing protein (.1.2) Potri.011G107800 [exp] 209 / 4e-62 AT3G14860 553 / 0.0 NHL domain-containing protein (.1.2) Potri.004G087300 [exp] 130 / 2e-33 AT1G23890 261 / 9e-84 NHL domain-containing protein (.1.2) Potri.017G129500 [exp] 125 / 8e-32 AT1G23890 247 / 3e-78 NHL domain-containing protein (.1.2) Potri.013G007800 [exp] 49 / 7e-06 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF01436 [flax] [poplar] NHL NHL repeat
Representative CDS sequence Show only first row Show all	>Lus10014529 pacid=23170867 polypeptide=Lus10014529 locus=Lus10014529.g ID=Lus10014529.BGIv1.0 annot-version=v1.0 ATGTGCAGACAATGGGTGGCTTTTGCTTTCATTTTCACTCTTCTCTTCAATGGGTTTTCTTCTGTTTCAGCTGCTACTCCTGCAAAACTTGTACTTGGGG TTGTCTCCAATGTGGCTTCTGCACTTGCAAAATGGCTATGGTCCCTCAACAATTCCAACCCTAACCCCAACCCCAAAACAGGTTCAAGGCTGAAAGGGCT TTTGGGTGGAGATGTCAATCCACCAATTCCTGAGCGTTCTATGGTGAAATTTGAAGATGGCTACTCCGTGGAGACGGTGTTCGATGGAAGTGAGCTTGGG ATTGAACCTTTCTCCGTCGTGGTTTCTCCAACCGGTGAACTCATGGTTCTCGATTCGGAGAACAGTAACGTTTACAAGATCCATACTCCACTCTCCAAAT ATAGCAAGCCGAAGCTGGTTGCTGGATCACTTGATGGAGATAGAGGACACATTGACGGGAAGTTAAGGGAATCGAGAATGAACCAACCAAAAGGTTTAGC TGTCGACGAAAGGGGAAACATATACATTGCTGACACCAAGAACATGGCAATAAGGAAGATCAGTGAGGGAGGAGTGACAACTATTGCAGGGGGTAAATGG AGTCGAGGAGGTGGTCGAGTTGATGATGGGACAAGTGAAGACGGCAATCTCTCGAACGATTTCGATGTGCGTTATGTTGGAAGTAGCTGCTCGCTTTTGG TTGTAGATCGAGGGAACCGTGCAGTTAGAGAGATTCAACTCCATGATCAGGACTGCAGCTATCAAGATGATACTACTACTTCCCTTTTCGGAATAGCAAT GCTTGTGCTTGCTGGGTTCTTTGGATATTTGTTGGCACTGCTCAAGTGGAAGGTCCAATCATACTTTTCTCCTCGTCATGAACAAAGAACTTACCCAGTG GCGCCATATCGAAGGCCTCCTCAGTCATTGATATACCCACTAATCTCAAACGAAGACGAACATGGGTTCGAAACGGAACAGCCCCTTCACTATCAATTCC AGGAGCAATACCAGCAGCAAGAACACAACAAGCATGTGAACTTATGGCCAATGCAGGATGTGACTCCTGATCAAGATTTACCACCACCAGAGAAAAAATA TCCGTTAGTAGAGACCAAGGAGTTGCCAAAGAATCAGCGTGTTAAGTCAAACCAGCATGAACAAAGAACTTACAGGGATGCTGATTACCACCAACAGCAG CACCATAGGAAATATGTTCCGATTTCTAAGACGCACTATGATGAGGGTTGCTGTGAGACGAATGGGATTGTGTTTGGAGCAGTCCACGAACAGGATGGGC ATCGAGAAGCAGTGATGATAAAGGCTGTTGACTACGCGGATAGAAGGTATAGTCAGCGTAATATTCGACCGCGGTATAACTATGTTGGTTATTCTCACCA TGCTTACTTGTCATGA
AA sequence Show only first row Show all	>Lus10014529 pacid=23170867 polypeptide=Lus10014529 locus=Lus10014529.g ID=Lus10014529.BGIv1.0 annot-version=v1.0 MCRQWVAFAFIFTLLFNGFSSVSAATPAKLVLGVVSNVASALAKWLWSLNNSNPNPNPKTGSRLKGLLGGDVNPPIPERSMVKFEDGYSVETVFDGSELG IEPFSVVVSPTGELMVLDSENSNVYKIHTPLSKYSKPKLVAGSLDGDRGHIDGKLRESRMNQPKGLAVDERGNIYIADTKNMAIRKISEGGVTTIAGGKW SRGGGRVDDGTSEDGNLSNDFDVRYVGSSCSLLVVDRGNRAVREIQLHDQDCSYQDDTTTSLFGIAMLVLAGFFGYLLALLKWKVQSYFSPRHEQRTYPV APYRRPPQSLIYPLISNEDEHGFETEQPLHYQFQEQYQQQEHNKHVNLWPMQDVTPDQDLPPPEKKYPLVETKELPKNQRVKSNQHEQRTYRDADYHQQQ HHRKYVPISKTHYDEGCCETNGIVFGAVHEQDGHREAVMIKAVDYADRRYSQRNIRPRYNYVGYSHHAYLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14890			NHL domain-containing protein ...		Lus10014529 [exp]	0	1
AT5G42930			alpha/beta-Hydrolases superfam...		Lus10005092 [exp]	1.7	0.9326
AT5G35740			Carbohydrate-binding X8 domain...		Lus10038801 [exp]	3.5	0.9036
AT4G05220			Late embryogenesis abundant (L...		Lus10006755 [exp]	4.7	0.9042
AT1G70280			NHL domain-containing protein ...		Lus10032158 [exp]	5.3	0.8899
AT3G24110			Calcium-binding EF-hand family...		Lus10016675 [exp]	8.7	0.8627
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	9.5	0.8894
AT5G66440			unknown protein		Lus10023551 [exp]	9.9	0.8791
AT1G55020		ATLOX1, LOX1	ARABIDOPSIS LIPOXYGENASE 1, li...		Lus10038242 [exp]	10.1	0.8858
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	10.7	0.8462
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	11.3	0.8820

Compare expression of checked genes

Lus10014529 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.