Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11770 315 / 2e-110 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) ATCG00430 138 / 1e-40 ATCG00430.1, PSBG photosystem II reaction center protein G (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039485 [exp] 348 / 3e-123 AT5G11770 352 / 4e-125 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032157 [exp] 247 / 9e-85 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032155 [exp] 247 / 9e-85 AT5G11770 277 / 7e-97 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Lus10032156 [exp] 75 / 9e-18 AT5G11770 47 / 6e-08 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G231701 [exp] 315 / 3e-110 AT5G11770 303 / 7e-106 NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial (.1) Potri.013G163100 [exp] 136 / 1e-39 ATCG00430 409 / 4e-147 photosystem II reaction center protein G (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01058 [flax] [poplar] Oxidored_q6 NADH ubiquinone oxidoreductase, 20 Kd subunit
Representative CDS sequence Show only first row Show all	>Lus10014530 pacid=23170871 polypeptide=Lus10014530 locus=Lus10014530.g ID=Lus10014530.BGIv1.0 annot-version=v1.0 ATGGCTATGATCACCAGAAACACCGCCTCTCGCCTCCCTATCCTCCTCGCCAACCACCGTGCTGGCCTCGCAGCTGCTCTCCACACCACCGTCCCCTCGC CATCCCCTGATAACGCAACCAAACCGACTTCCTACGCCCCGCCACCGCCTCCGGCTACCTCTTCCCCCGCTGGCCTCTCCAAGACGGCCGAATTCGTGAT CTCCAAGGTCGATGATGTCATCAACTATGTCCGCCGAGGATCCATCTGGCCAATGACTTTCGGGCTCGCTTGCTGCGCTGTCGAGATGATGCACACGGGT GCGGCACGCTACGATCTGGATCGGTTTGGTGTCATTTTCAGGCCTAGCCCTCGCCAGTCTGATTGTATGATTGTCGCCGGCACCTTAACTAACAAGATGG CTCCTGCTCTTCGCAAGGTGTACGACCAAATGCCGGAGCCGAGATGGGTAATCTCCATGGGAAGCTGTGCAAATGGTGGCGGCTACTATCACTACTCGTA CTCCGTTGTACGCGGTTGCGACAGGATTGTCCCCGTTGACATATATGTTCCAGGGTGCCCTCCGACTGCCGAGGCACTACTCTATGGAATACTCCAGCTG CAGAAAAAGATTAACAGACGCAAAGATCTCATGCATTGGTGGACTAAGTAA
AA sequence Show only first row Show all	>Lus10014530 pacid=23170871 polypeptide=Lus10014530 locus=Lus10014530.g ID=Lus10014530.BGIv1.0 annot-version=v1.0 MAMITRNTASRLPILLANHRAGLAAALHTTVPSPSPDNATKPTSYAPPPPPATSSPAGLSKTAEFVISKVDDVINYVRRGSIWPMTFGLACCAVEMMHTG AARYDLDRFGVIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQL QKKINRRKDLMHWWTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11770			NADH-ubiquinone oxidoreductase...		Lus10014530 [exp]	0	1
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10027847 [exp]	1.7	0.8708
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10020390 [exp]	2.0	0.8608
AT2G19270			unknown protein		Lus10015539 [exp]	3.5	0.8424
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10014607 [exp]	5.7	0.8082
AT5G08060			unknown protein		Lus10034681 [exp]	5.7	0.8354
AT1G13950		EIF5A, ATELF5A-...	eukaryotic elongation factor 5...		Lus10036801 [exp]	6.9	0.7948
AT1G29790			S-adenosyl-L-methionine-depend...		Lus10015264 [exp]	7.4	0.8344
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10014001 [exp]	9.5	0.8066
AT3G07480			2Fe-2S ferredoxin-like superfa...		Lus10009568 [exp]	12.2	0.7808
AT4G10810			unknown protein		Lus10023038 [exp]	13.9	0.8287

Compare expression of checked genes

Lus10014530 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.