Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23850 78 / 2e-16 unknown protein AT1G23840 74 / 4e-15 unknown protein AT1G23830 63 / 3e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032153 [exp] 171 / 1e-52 AT1G23850 49 / 1e-06 unknown protein Lus10039417 [exp] 86 / 5e-20 ND 37 / 7e-06 Lus10030860 [exp] 76 / 1e-15 AT1G23850 157 / 4e-45 unknown protein Lus10000805 [exp] 61 / 6e-12 AT1G27220 40 / 7e-05 paired amphipathic helix repeat-containing protein (.1) Lus10037909 [exp] 47 / 3e-06 ND 38 / 0.002 Lus10035067 [exp] 44 / 8e-05 AT1G71260 270 / 1e-91 WHIRLY 2 (.1) Lus10043127 [exp] 41 / 0.0007 AT5G46740 362 / 2e-115 ubiquitin-specific protease 21 (.1) Lus10026940 [exp] 41 / 0.001 AT4G17510 327 / 4e-108 ubiquitin C-terminal hydrolase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262900 [exp] 122 / 7e-33 AT1G23840 103 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014532 pacid=23170857 polypeptide=Lus10014532 locus=Lus10014532.g ID=Lus10014532.BGIv1.0 annot-version=v1.0 ATGGGCCATCTACTGAACGTCATCAACACCATAATTCTAGTTCATTCAGCATCAACAATACACGCAGGGAAGAAGGAGAATCTGAAGGAAATGCTGTTGA GTCCTTTTAGGCAAGCGGGTCTAGTTGGACCGTATATTACGTCAGTCTGCAATTTGGCAATGGTTTTGTTGGTACTGGCTGGATTGGCATCCTTGTGTCT CCAAATGTTCGCACTGGGCGGAATATGGGTTTCCAAGGTGCTATTCGGGTCGATTTTTGTGGGCTTGCTTGCCAAGTATGTGGAGTGGAGTGCGATCTGG AACGTGGGTTTGGTCGTGTCGATTTTGGAAGGGAAGCACGGGTACATTGGGATCGGGGTTGCTGAATGTATCAGTAGAGGATGTGGGAACAGAGGGTTTC TTTTGATGCTGGTTTTCCTGGTTTGCAGAGTTGTTCTGAAGGTGGGTTTCTGGCACTATGTATTTTTCCTGGAATCATCTGGATATTATATGGTGCTTGT TGGAGAAGGTGGATTGGCTTGGTTTGGGGAAGTGATGAATTGGGTTGTTTGTACTGTTTATTACTATGACTGTAGAAGGAGGTTTCTTGAGAAGAAAGTT GATTTGGAGAGGCAAAGAGGAGCAGATATACCGAGGATGGGTAGCGTCCCAGTGAAGGAGGCAGAAGGGGAGGCGCTCTTGACAGCCATCGAGTGGGTTC GAGACATGGTATACAAGCAATGCATCTTCGAGATTGATACTCAATCCGTGTCGTTGGCTGTAAATGGATGA
AA sequence Show only first row Show all	>Lus10014532 pacid=23170857 polypeptide=Lus10014532 locus=Lus10014532.g ID=Lus10014532.BGIv1.0 annot-version=v1.0 MGHLLNVINTIILVHSASTIHAGKKENLKEMLLSPFRQAGLVGPYITSVCNLAMVLLVLAGLASLCLQMFALGGIWVSKVLFGSIFVGLLAKYVEWSAIW NVGLVVSILEGKHGYIGIGVAECISRGCGNRGFLLMLVFLVCRVVLKVGFWHYVFFLESSGYYMVLVGEGGLAWFGEVMNWVVCTVYYYDCRRRFLEKKV DLERQRGADIPRMGSVPVKEAEGEALLTAIEWVRDMVYKQCIFEIDTQSVSLAVNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23850			unknown protein		Lus10014532 [exp]	0	1
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10027396 [exp]	5.9	0.7853
AT3G29635			HXXXD-type acyl-transferase fa...		Lus10021388 [exp]	11.1	0.8047
AT4G25400	bHLH	bHLH118	basic helix-loop-helix (bHLH) ...		Lus10031675 [exp]	19.8	0.8018
AT1G65870			Disease resistance-responsive ...		Lus10029306 [exp]	28.0	0.7850
AT5G62420			NAD(P)-linked oxidoreductase s...		Lus10031162 [exp]	30.0	0.7513
AT3G47440		TIP5;1	tonoplast intrinsic protein 5;...		Lus10031735 [exp]	45.1	0.6964
AT3G51990			Protein kinase superfamily pro...		Lus10015478 [exp]	49.5	0.7281
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10002934 [exp]	54.8	0.7264
AT2G19050			GDSL-like Lipase/Acylhydrolase...		Lus10002771 [exp]	55.7	0.6958
AT5G66430			S-adenosyl-L-methionine-depend...		Lus10024671 [exp]	69.9	0.6930

Compare expression of checked genes

Lus10014532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.