Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14790 260 / 1e-84 ARM repeat superfamily protein (.1) AT3G01450 252 / 7e-82 ARM repeat superfamily protein (.1) AT4G15830 154 / 3e-44 ARM repeat superfamily protein (.1) AT3G18530 0 / 1 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032152 [exp] 478 / 9e-171 AT5G14790 324 / 3e-110 ARM repeat superfamily protein (.1) Lus10034168 [exp] 162 / 3e-47 AT4G15830 290 / 5e-98 ARM repeat superfamily protein (.1) Lus10043416 [exp] 152 / 2e-43 AT4G15830 291 / 2e-98 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G221900 [exp] 176 / 7e-53 AT4G15830 293 / 2e-99 ARM repeat superfamily protein (.1) Potri.010G014200 [exp] 172 / 3e-51 AT4G15830 309 / 1e-105 ARM repeat superfamily protein (.1) Potri.008G221700 [exp] 157 / 1e-45 AT4G15830 318 / 5e-109 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF12348 [flax] [poplar] CLASP_N CLASP N terminal
Representative CDS sequence Show only first row Show all	>Lus10014533 pacid=23170905 polypeptide=Lus10014533 locus=Lus10014533.g ID=Lus10014533.BGIv1.0 annot-version=v1.0 ATGTGTGTAAATCAGTTGGTTAACGTCGGAGGGCTTGGAGCGTCAATTCAAACTGCAAGATGTAACAGAAACTCGGTGGCAATATCGACATTAACCACAG ATCGGAGCATTGATTGTAATGGGTGCTCCAGTATAGGGGCCATCGACAAAAATTGCAATGGGAATGCTGTTAGTAATGTTGAAGAGCACCCAAAAAATAC CATTTCCTCTAAGGTTTCAGCTGTTAATGGGACTTCGAGTGTCAATTCTGAATCAGAAACTGTAAGTTCAGAGGTTACGGAGGTGGAGTACATTGAATCT GAGAATTTGTCTGATGTGGAGGATGTTGATGTTTGCGTGAAGGATCTTATTGCCGGTCTTCAATCAAAAGATTGGGTGCTGGTTTGTGAATCACTTAACA ATACACGCCGGTTATCAAGTTTTCACAAGGAGAAATTGCTGGATATGCTGGATGATGTGATTCCTCTGCTAGTCAAGTGCTTGAAGAATCCAAGGAGTGC TGTTTGCAAAACCACGATTATGACTTGTGGAGACATATTCATCACTTACAATGATCACATAGTCGATTCTCTGGATCCTTTGCTGTTACAACTTCTCCTC AAGTCTTCACAAGATAAAAGATTTGTTTGCGAGGCAGCTGAAAAAACATTGATGGCATTGACAACTTCAGTTTCTCCAACACTGCTGCTGCCAAAGCTGC AGCCTCATCTCTACAGCAAAAACCCTCGAATTCGAGCCAAGGCATCTATCTACTTCTGCCGGAGTGTTCCAAGATTGGGTACCGAAGGAATCACAGTGTA CGGAATTGACAAGTTGGTCGAAATTGCTGCTCGTCAACTCAGTGACAAACTTCCAGAGTCAAGAGAAGCTGCTCGAATCCTGCTTACGGAGCTTAAAACT GCGTATGAGAAGTCTTTGGTACCTGAAGATCCGGAACCAATCTCTTGGGAGCAGTTCTGTTCTTCGAAATTTCCTCCAACAACCGCACAAGCGGTGCTCC GTGTCACGGGTGCTGGTCGAGGCGGTCTCGTTCAGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10014533 pacid=23170905 polypeptide=Lus10014533 locus=Lus10014533.g ID=Lus10014533.BGIv1.0 annot-version=v1.0 MCVNQLVNVGGLGASIQTARCNRNSVAISTLTTDRSIDCNGCSSIGAIDKNCNGNAVSNVEEHPKNTISSKVSAVNGTSSVNSESETVSSEVTEVEYIES ENLSDVEDVDVCVKDLIAGLQSKDWVLVCESLNNTRRLSSFHKEKLLDMLDDVIPLLVKCLKNPRSAVCKTTIMTCGDIFITYNDHIVDSLDPLLLQLLL KSSQDKRFVCEAAEKTLMALTTSVSPTLLLPKLQPHLYSKNPRIRAKASIYFCRSVPRLGTEGITVYGIDKLVEIAARQLSDKLPESREAARILLTELKT AYEKSLVPEDPEPISWEQFCSSKFPPTTAQAVLRVTGAGRGGLVQSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14790			ARM repeat superfamily protein...		Lus10014533 [exp]	0	1
AT1G29150		RPN6, ATS9	REGULATORY PARTICLE NON-ATPASE...		Lus10037125 [exp]	3.5	0.8384
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10037242 [exp]	4.0	0.8320
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Lus10023115 [exp]	4.7	0.8505
AT5G25510			Protein phosphatase 2A regulat...		Lus10033069 [exp]	5.5	0.8302
AT2G25800			Protein of unknown function (D...		Lus10013391 [exp]	7.9	0.8453
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	10.5	0.8214
AT1G76400			Ribophorin I (.1)		Lus10025159 [exp]	15.1	0.8274
AT3G13320		ATCAX2, CAX2	cation exchanger 2 (.1)		Lus10009431 [exp]	15.3	0.8127
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	16.7	0.8269
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Lus10000903 [exp]	18.2	0.8168

Compare expression of checked genes

Lus10014533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.