Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01480 639 / 0 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) AT3G15520 143 / 1e-37 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G53720 48 / 1e-05 ATCYP59, CYP59 cyclophilin 59 (.1) AT2G36130 45 / 1e-05 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G33060 44 / 0.0001 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032151 [exp] 707 / 0 AT3G01480 512 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10038601 [exp] 139 / 5e-36 AT3G15520 597 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10037891 [exp] 127 / 1e-32 AT3G15520 508 / 5e-180 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10021335 [exp] 47 / 6e-06 AT2G36130 286 / 1e-100 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10017010 [exp] 45 / 5e-05 AT2G36130 278 / 4e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351400 [exp] 663 / 0 AT3G01480 666 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.017G072800 [exp] 662 / 0 AT3G01480 665 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.001G404700 [exp] 141 / 7e-37 AT3G15520 612 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.016G075600 [exp] 47 / 4e-06 AT2G36130 278 / 3e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.005G097500 [exp] 47 / 3e-05 AT1G53720 667 / 0.0 cyclophilin 59 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10014534 pacid=23170977 polypeptide=Lus10014534 locus=Lus10014534.g ID=Lus10014534.BGIv1.0 annot-version=v1.0 ATGGCGGCGGCGGCAGCAGGAGCTTCAATCCGTTGGCACTATTCCTCCACTTCACCCTCATCGCATCCCATTCTAAACACCAAATCGCCCATAACCCACA TTGCCATTCCTAAACGTCTAGCTCGAGTCTCCTGTTCACTCAATAGTCGTCCAAGCCAGGTTAGTCAGAATTGGAAAACTTCAGCTTGTCAGAAAAAGGG GTTTGATTTGATGGATTTTGCGAAATTTGGTTTTCAGGGGATAACAGAGAAGAAGGCGTTTTCGTTCAAGGAGTGTGCGATTTCGGTTGCGTTGGCAGTC GGGTTAATTACTGGAATGCCATCGCTGGAGAATTTGGGTCCTCCCAATGCGAATGCTGTGTTGATATCGGGACCTCCGATCAAAGACCCTGGAGCTTTGC TAAGGTATGCATTGCCGATTGACAATAAAGCCATAAGGGAAGTCCAGAAGCCACTTGAGGATATTACTGATAGTCTCAAGATTGCTGGACTTAAAGCTCT TGATTCCGTGGAAAGAAATTTGAAGCAGGCATCTCGAGCTCTACAGCAAGGCAAAAGTTTGATTATCGCTGGCTTGGCTGAGCCAAAGAGGCCTGGAGGA GTAGAGTTACTTGACAAGCTGGAAACTGGACTTAATGAGCTTCAGATGATTGTGGAGAGCAGGAATAGAGATGCTGTTGCTCCGAAACAAAGGGAGCTGC TTGATTATGTTGGAAGTGTTGAAGAGGACATGGTGAATGGATTCCCTTACGAAGTCCCTGAAGAATACAGAACTATGCCTCTCTTGAAAGGTAGAGCAAC TGTGGACATGAAAGTCAAGGTCAAAGACAATCCCAATCTCGAGGACTGCGTGTTCCGCATTGTCCTTGATGGTTACAATGCTCCAGTAACTGCCGGAAAT TTCGTGGACTTGGTACAGAGGCACTTCTACGATGGCATGCAGATTCAGAGGGCCGATGGCTTTGTTGTTCAAACTGGCGATCCAGAAGGTCCTGCTGAGG GATTCATTGATCCTAGCACGGAGAAGACTCGAACCATTCCGTTGGAAATCATGGCGGATGGAGAGAAAGAGCCTTTCTACGGTGCAACTCTTGAAGAGCT TGGTCTATACAAGGCCCAAACGAAGCTTCCATTCAATGCATTTGGGACGATGGCAATGGCCAGAGATGAGTTTGAAGACAACTCAGCTTCAAGCCAAATC TTCTGGCTGCTGAAAGAAAGTGAACTCACTCCTAGCAACGCAAACATATTGGATGGCCGGTATTCTGTGTTTGGTTACATAACACAGAATGAAGACCTCT TAGCAGATCTCAAAGTTGGAGATGTTATAGAGTCAATGCAAGTCGTTGCTGGCCTTGAAAATTTAGCCAACCCTAGCTACAAAATCGCTGGCTAG
AA sequence Show only first row Show all	>Lus10014534 pacid=23170977 polypeptide=Lus10014534 locus=Lus10014534.g ID=Lus10014534.BGIv1.0 annot-version=v1.0 MAAAAAGASIRWHYSSTSPSSHPILNTKSPITHIAIPKRLARVSCSLNSRPSQVSQNWKTSACQKKGFDLMDFAKFGFQGITEKKAFSFKECAISVALAV GLITGMPSLENLGPPNANAVLISGPPIKDPGALLRYALPIDNKAIREVQKPLEDITDSLKIAGLKALDSVERNLKQASRALQQGKSLIIAGLAEPKRPGG VELLDKLETGLNELQMIVESRNRDAVAPKQRELLDYVGSVEEDMVNGFPYEVPEEYRTMPLLKGRATVDMKVKVKDNPNLEDCVFRIVLDGYNAPVTAGN FVDLVQRHFYDGMQIQRADGFVVQTGDPEGPAEGFIDPSTEKTRTIPLEIMADGEKEPFYGATLEELGLYKAQTKLPFNAFGTMAMARDEFEDNSASSQI FWLLKESELTPSNANILDGRYSVFGYITQNEDLLADLKVGDVIESMQVVAGLENLANPSYKIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	0	1
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	1.4	0.9630
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	1.4	0.9644
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	1.7	0.9575
AT3G23070		ATCFM3A	CRM family member 3A (.1)		Lus10001187 [exp]	3.5	0.9499
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10009787 [exp]	4.0	0.9551
AT1G60230			Radical SAM superfamily protei...		Lus10013005 [exp]	5.5	0.9411
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10025423 [exp]	5.9	0.9539
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	6.2	0.9389
					Lus10038585 [exp]	6.5	0.9364
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	8.4	0.9454

Compare expression of checked genes

Lus10014534 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.