Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14780 594 / 0 FDH formate dehydrogenase (.1) AT1G17745 107 / 5e-25 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 100 / 8e-23 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT1G72190 97 / 5e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 96 / 5e-22 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT3G19480 96 / 3e-21 D-3-phosphoglycerate dehydrogenase (.1) AT1G12550 87 / 6e-19 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 86 / 2e-18 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G68010 54 / 6e-08 ATHPR1, HPR hydroxypyruvate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032150 [exp] 705 / 0 AT5G14780 618 / 0.0 formate dehydrogenase (.1) Lus10027868 [exp] 109 / 7e-26 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 107 / 4e-25 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 107 / 7e-25 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10036537 [exp] 96 / 7e-22 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041393 [exp] 95 / 1e-21 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035758 [exp] 95 / 8e-21 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10025796 [exp] 89 / 9e-20 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 89 / 1e-19 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G161300 [exp] 635 / 0 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.014G022800 [exp] 110 / 4e-26 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 109 / 7e-26 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.010G249600 [exp] 109 / 8e-26 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.002G151200 [exp] 103 / 7e-25 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.008G009500 [exp] 105 / 3e-24 AT1G17745 826 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.009G096600 [exp] 104 / 3e-24 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.001G300900 [exp] 102 / 2e-23 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.013G104200 [exp] 96 / 1e-21 AT1G72190 466 / 1e-164 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.001G113250 [exp] 95 / 1e-21 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02826 [flax] [poplar] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CL0325 [flax] [poplar] Form_Glyc_dh PF00389 [flax] [poplar] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10014535 pacid=23170859 polypeptide=Lus10014535 locus=Lus10014535.g ID=Lus10014535.BGIv1.0 annot-version=v1.0 ATGGCGATGATGATGAACCTGAAGCGAGCTGCTACTTCTGCCACCCGCGCTTTTGCTTCTTCCTCCTCTGGATCTCTCTCCAGACACCTCCACGCTTCTG CTGGGAGCAAGAAGATCGTCGGAGTGTTCTACAAGGCCAATGAGTACGCAGAGAAGAACCCCAATTTCCTCGGTTGCGCTGAGCACGCTTTGGGCATTCG CGAATGGCTTGAATCTCAAGGCCACCACTACATCGTCACCGATGACAAAGACGGTCCCAACTCCGAGCTGGAGAAGCACATCCCCGATCTTCACGTTCTA ATATCCACACCATTCCATCCCGCCTACGTCACCGCTGAACGGATCAAGAAGGCCAAGAACCTGCAGCTCCTTCTCACCGCCGGAATCGGATCCGATCACA TCGATCTGCCGGCGGCGGCCCGGGCGGCTGCCGCCGGGTCGACCGTTGCGGAGGTTACCGGAAGCAATGTGGTTTCGGTGGCTGAGGATGAGCTCATGAG GATTCTTATCCTGATGAGGAACTTCTTGCCTGGTCATCACCAGGTGATCAATGGGGAGTGGGATGTTGCTGGTATAGCTTACAGGGCTTATGATCTTGAA GGGAAAACTATCGGTACCGTTGGCTGTGGACGGATTGGGAAGCTTTTGCTCCAGAGGCTGAAACCTTTTGGCTGCAATCTGCTTTATCATGACAGGCTGA AAATGGAGCCGGAGCTCGAGACTCAGATTGGAGCTAAGTTTGAGGAGGATGTTGATGCCATGCTTCCCAAATGTGATGTGGTTGTCATCAACACTCCGCT AACTGAGAAGACCAAAGGAATGTTCGACAAAGATAGGATTTTGAAGATGAAGAAAGGAGTACTGATCGTGAATAATGCTCGAGGGGCGATTATGGATACA CAAGCAGTTGTTGATGCTTGCTCCAGTGGACATATTGGAGGTTATAGTGGGGATGTTTGGTATCCGCAGCCGGCACCAAAGGACCATCCATGGCGATACA TACCGAACCAGGCAATGACTCCGCATATCTCTGGCACCACCATTGATGCACAACTGAGGTATGCTGCTGGAGTGAAGGATATGCTGGATAGATACTTCAA GGGAGAAGATTTTCCGCCGCAGCATTACATCGTCAAGGAAGGCAAGCTGGCAAGCCAGTACCAGTGA
AA sequence Show only first row Show all	>Lus10014535 pacid=23170859 polypeptide=Lus10014535 locus=Lus10014535.g ID=Lus10014535.BGIv1.0 annot-version=v1.0 MAMMMNLKRAATSATRAFASSSSGSLSRHLHASAGSKKIVGVFYKANEYAEKNPNFLGCAEHALGIREWLESQGHHYIVTDDKDGPNSELEKHIPDLHVL ISTPFHPAYVTAERIKKAKNLQLLLTAGIGSDHIDLPAAARAAAAGSTVAEVTGSNVVSVAEDELMRILILMRNFLPGHHQVINGEWDVAGIAYRAYDLE GKTIGTVGCGRIGKLLLQRLKPFGCNLLYHDRLKMEPELETQIGAKFEEDVDAMLPKCDVVVINTPLTEKTKGMFDKDRILKMKKGVLIVNNARGAIMDT QAVVDACSSGHIGGYSGDVWYPQPAPKDHPWRYIPNQAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPPQHYIVKEGKLASQYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10014535 [exp]	0	1
AT5G21170		AKINBETA1	5'-AMP-activated protein kinas...		Lus10041287 [exp]	2.0	0.8973
AT2G38280		ATAMPD, FAC1	EMBRYONIC FACTOR1, ADENOSINE 5...		Lus10027814 [exp]	2.0	0.8698
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009215 [exp]	9.1	0.7055
AT3G17770			Dihydroxyacetone kinase (.1)		Lus10031311 [exp]	11.2	0.8535
AT1G73750			Uncharacterised conserved prot...		Lus10007966 [exp]	11.5	0.8661
AT5G43830			Aluminium induced protein with...		Lus10039382 [exp]	13.6	0.8222
AT3G48360		ATBT2, BT2	BTB and TAZ domain protein 2 (...		Lus10013670 [exp]	13.8	0.8619
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10012571 [exp]	14.3	0.8632
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10031003 [exp]	14.5	0.7273
AT1G71980			Protease-associated (PA) RING/...		Lus10009438 [exp]	15.7	0.8200

Compare expression of checked genes

Lus10014535 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.