Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40280 417 / 2e-142 ATFTB, WIG, ERA1 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) AT3G12070 81 / 1e-16 AtRGTB2 RAB geranylgeranyl transferase beta subunit 2 (.1.2) AT2G39550 76 / 7e-15 GGB, ATGGT-IB, PGGT-I GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) AT5G12210 73 / 5e-14 AtRGTB1 RAB geranylgeranyl transferase beta subunit 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032149 [exp] 727 / 0 AT5G40280 465 / 1e-161 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10039714 [exp] 83 / 2e-17 AT3G12070 509 / 0.0 RAB geranylgeranyl transferase beta subunit 2 (.1.2) Lus10018502 [exp] 82 / 4e-17 AT5G12210 510 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Lus10040303 [exp] 74 / 8e-14 AT2G39550 436 / 4e-152 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Lus10023422 [exp] 45 / 8e-05 AT2G39550 175 / 1e-52 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G073200 [exp] 498 / 5e-175 AT5G40280 511 / 5e-180 WIGGUM, ENHANCED RESPONSE TO ABA 1, ARABIDOPSIS THALIANA FARNESYL TRANSFERASE BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.013G012500 [exp] 84 / 1e-17 AT5G12210 525 / 0.0 RAB geranylgeranyl transferase beta subunit 1 (.1.2) Potri.008G054500 [exp] 82 / 1e-16 AT2G39550 481 / 8e-171 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1) Potri.010G206001 [exp] 0 / 1 AT2G39550 260 / 6e-86 GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT, Prenyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10014536 pacid=23170852 polypeptide=Lus10014536 locus=Lus10014536.g ID=Lus10014536.BGIv1.0 annot-version=v1.0 ATGGCGACGCCGACGAAGAGCCAGACTGACCAGTGGCGTGTTGAAGAAGTTGTCTTCAAGATTTACGACCAGTTCGCTTATAGAGCTCCTCCTAGAGATC GAATTGCCCACTTCAAACTGCGACGCGATAAAAACGTCGAGTATCTCACCAAAGGTCTCCAGCAGCTCAACCCTACCTTCGCTGTATTGGACTCAAGTCG ACCTTGGCTTTGCTATTGGATCTTGCACTCACTTGCTTTACTTGGAGAGTCAATTGATGATGAGCTAGAGGATAACGCCATCGACTTCCTTAGCCGCTGT GAGATGCCTCATCTACTAACAACTTATGCTGCAGTCAATGCGCTTGTCACTTTGGGTGGACATAAAGCCTTGTCGTCAATTAATAGAGATAATGTCTACC AGTTCTTAAAGAAAATGAAAGACTCGAGTGGGGCCTTCAGGATGCATGATGGTGGGGAAATTGATGTAAGGGCTTGCTATGGTGCATTGTCGGTTGCGAG TATTCTCAACATCCTGGATGATGAACTGATCAACGGTGTTGGAGATTACATCTTAAGGTTAGTACCTGGTCAGCAGATTCCTGAATTCTTACGCATGACC TTCTTGTCTTCTGTTTCTCTCAGTTTAGACATGTTAAACTTGGACAGAAGATCTGAAACGATAATTTTGCTGTCCTCTGACAGTTCTCAGACTTATGAAG GTGGTATTGGCGGAGAACCTGGCTCTGAAGCTCACGGAGGGTATACTTTCTGTGGACTAGCTGCCATGATTCTCATCAATGAAGCTAATCGTTTGGACTT GGCTCGTTTGATTGATTGGGTGACATTTCGACAAGGAATAGAGTGTGGATTTCAAGGCAGAACTAATAAATTGGTTGATGGTTGTTACTCCTTTTGGCAG GAACTTGATCAGGGAGGTTTATTTGCACTATTGCAAAGAGTACAGTCATTTACCGGGGAAGGAAATGCATCGTCAGACGTAGAAGTAGAATGGGTCACCG ATGGTAGTTCAGAGGAAGAAGAAGATGAAGATGGGGATTCGTCGGAAGATCACGAAACTTGCCATCCCGAGGGAAGATTCTTATTCTCAAGAGAACTACT TGCAGGGCATCAGAGCAGCAGTAGTGTTCAACACCACATTCGAGATATGACGATACGGCAGAACCTCTCTTCAACAATGCTGGAGAATGAGGAAGGAGGG TTGAGAGACAAACCAGGGAAGGGGTGCGACTACTACCATACTTGCTACTGTTTAAGCGGGCTGTCTGTATGTCAGTACAGCCGGTCAAAAGACGAGAACT CTCCACCATTGCCGAGCTCTGTGTTGGGACCTTATTCTAACCTCTTGGAGCCTACGCATCCCGTCTACAATGTAGTCATGAGGCAGTATCATGAAGCTCG AGACTTCTTCTCTAATTCTTAA
AA sequence Show only first row Show all	>Lus10014536 pacid=23170852 polypeptide=Lus10014536 locus=Lus10014536.g ID=Lus10014536.BGIv1.0 annot-version=v1.0 MATPTKSQTDQWRVEEVVFKIYDQFAYRAPPRDRIAHFKLRRDKNVEYLTKGLQQLNPTFAVLDSSRPWLCYWILHSLALLGESIDDELEDNAIDFLSRC EMPHLLTTYAAVNALVTLGGHKALSSINRDNVYQFLKKMKDSSGAFRMHDGGEIDVRACYGALSVASILNILDDELINGVGDYILRLVPGQQIPEFLRMT FLSSVSLSLDMLNLDRRSETIILLSSDSSQTYEGGIGGEPGSEAHGGYTFCGLAAMILINEANRLDLARLIDWVTFRQGIECGFQGRTNKLVDGCYSFWQ ELDQGGLFALLQRVQSFTGEGNASSDVEVEWVTDGSSEEEEDEDGDSSEDHETCHPEGRFLFSRELLAGHQSSSSVQHHIRDMTIRQNLSSTMLENEEGG LRDKPGKGCDYYHTCYCLSGLSVCQYSRSKDENSPPLPSSVLGPYSNLLEPTHPVYNVVMRQYHEARDFFSNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Lus10014536 [exp]	0	1
AT5G66600			Protein of unknown function, D...		Lus10016786 [exp]	10.2	0.8143
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038817 [exp]	14.5	0.7827
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Lus10028400 [exp]	15.1	0.7926
AT4G12740			HhH-GPD base excision DNA repa...		Lus10043074 [exp]	29.4	0.8044
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10026955 [exp]	72.6	0.7684
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	76.2	0.7654
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	98.6	0.7621
AT4G38380			MATE efflux family protein (.1...		Lus10014440 [exp]	123.4	0.7307
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10035100 [exp]	147.2	0.7335
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	166.0	0.7241

Compare expression of checked genes

Lus10014536 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.