Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11570 121 / 7e-29 Major facilitator superfamily protein (.1) AT3G16180 122 / 1e-28 Major facilitator superfamily protein (.1) AT2G02020 117 / 2e-27 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G52190 113 / 6e-26 Major facilitator superfamily protein (.1) AT5G40300 103 / 3e-24 Uncharacterised protein family (UPF0497) (.1) AT2G36330 103 / 5e-24 Uncharacterised protein family (UPF0497) (.1) AT1G69870 94 / 1e-19 NRT1.7 nitrate transporter 1.7 (.1) AT5G62820 91 / 1e-19 Uncharacterised protein family (UPF0497) (.1) AT3G54140 91 / 9e-19 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 91 / 1e-18 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032148 [exp] 270 / 1e-83 AT2G36330 82 / 7e-18 Uncharacterised protein family (UPF0497) (.1) Lus10008539 [exp] 164 / 1e-42 AT1G52190 371 / 8e-122 Major facilitator superfamily protein (.1) Lus10020101 [exp] 150 / 7e-38 AT1G52190 360 / 2e-117 Major facilitator superfamily protein (.1) Lus10023663 [exp] 140 / 2e-34 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 117 / 4e-27 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 104 / 7e-23 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 102 / 4e-22 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 99 / 4e-21 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10037896 [exp] 97 / 1e-20 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G087500 [exp] 137 / 1e-33 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 124 / 2e-29 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.012G079800 [exp] 106 / 4e-25 AT2G36330 218 / 3e-70 Uncharacterised protein family (UPF0497) (.1) Potri.006G240000 [exp] 107 / 4e-24 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.015G075100 [exp] 97 / 1e-21 AT2G36330 247 / 3e-81 Uncharacterised protein family (UPF0497) (.1) Potri.009G042400 [exp] 100 / 2e-21 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G351200 [exp] 97 / 1e-20 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040301 [exp] 95 / 4e-20 AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1) Potri.017G076800 [exp] 94 / 2e-19 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.016G111900 [exp] 92 / 4e-19 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10014537 pacid=23170868 polypeptide=Lus10014537 locus=Lus10014537.g ID=Lus10014537.BGIv1.0 annot-version=v1.0 ATGGAACCCCATGAACAGAATCCCCATCTCCCGCCGGTGGAGGAGGAGGAGAAGCAAAAAGAGGAAGAAGCAGCCGGTCACTACGACTTCGATTCTTCTT CTCCGGAATCATCTCCAGATCAGAAACCAGTTTCGATTCCGCAACTCGAAGAAGAACACAACATCTCCACTTCACCTCCGCCGCCGCCTGAGAAAAGGGA CGTCGACGGTCACTACGAATTCGAATCATCTCCAGAGCCCGAATTCATCCAGCTGCATCATCATCAACAACAACAGCCGCCGGAAGAAGTAGTAGCAGCA CACAACAACAATCACAACATCGCTCATCCGCCGCCGCCCTCCGTCACCGTCCAATACTCTTCTCCTCCTCGTCCTCTACCGCCGCCGCAGAAAGATTCTC CTTATCGAATCCGGAAAGCGCTAGATGAATCCTCCTCCCCTGAATCCCGGGCGCCTACACCCGATCCCGCCACTTCCTCCGTCGGCAGAGAAGAGGAAGG CGGCGGCGGCGGGAGAAGGAGGAGAGTACCGAGACCTAATTTGTCGATTCTGAGGAAGATGAAGTCGGAAAAGATCAGGAGGAGGAGTCTGATTGGTTGC AGAAGCTGTGGATTGGTGTTGTGCTTGGTTTCCCTCTCTGTTTTGGCAGCTGATAAGGATCAAGGCTGGGCTCTCGACTCTTTCTACCGTTACAGAGAAT TCAGGTATTGCTTGACGGTGAATGTGATAGGGTTTATGTACTTGAGCCTGCAATTAGCTGATGTTGCCTACACATTGATAAAAGGATATGTGAATCCGGC GAGGAATCGCCGCCGGGATTGCTTTGATTTCTCTCTCGATCAGGTAATGGCGTATCTGCTGTTATCAGCATCAACAACAGCGGCGTACAGAGTGGAAGAG TGGGAATCAAATTGGGGGAAAGACCAATTTCCAACTATGGCAAGAGCATCTCTGTCGCTCTCCTTCTTAGCATTTCTTGCCTTTGCATTCACCTCCCTTC TTTCTGCCGCCGGTGGTAACTGTCGGGAGCCAAACAACAACCAGCCAGCAAGGAACGCCGCCAGCAGCCCATCCACAGGTGCTGGAAGCCTCCGTCTTCG TAGCAGCTGCACCCAACTGTGGTTCCAGCGGCGGAGATACAACTTGTGCAACCGGCGCCCAGTGGAAATGGTACCGATAGCACCACCTGCTGCCGGCGCC ACAGCGGTGATGCCAGTTGTCGCAGTTCGACATCACCAGTCAATTAGTAGCGCACTTGGGCGGTCCACACGAGATGTTGGAGAAATTGTCGATCGTGGGA CTCCAATCAACCATGACGTTGTATTGGAAGCGAGAATACCACCACCGAAATACGACGACCGCTGCCATCCTCTTCTCGTGGAACTCGCTCACCAACTTCA CTCCGATCCTCGGAGCGCTCGCCTCCGATTCATACGGACACTTCCAAGTCATCTCCGTCTGTTCGGCGGTCGCTTTCTGGGCTTAGTGGTTCTGTGGGTG ACGGCGTTAGTTCCTGACGCACAGCCTACGTGCCCGGCAACTGGAGATTCCTGCATCACGCCTACCACCGGTCAACTCTTCCTTCTCCTCACGGCGTTTA TTCTGACGGCCATAGGAGCAGGGGGAATACGCCCCTGCTCCCCGACATTTGGGGAGGACCAGATACGGGACTCCAGTGACCCGGACAACCGGAGGAAGGT AGAGGTTTTCTACAGCTGGTACTATACGTCCGTGAGGGTTGCGATGATCGTCTCCATCATCGTCATCTCGACAGCCCAGGCGTATTATGGGTGGGGCATC GCGTTGGGTCTCCCCGTGGTGCTGATGTTTGCGGCGGTCGTGGTCTTCCTCTCCGGCAAGTCAAACCTGTGCACGGTGCGCCACGTGGAAGGGCTGAAAG CTCTTATCAAAGTCCTCCCACATTGGTCAACATGCATCATAGTAGGCATCGCCAACAACCCAGGGCCCATCGCCACACTCCAAGCCCAAGTTATGGACCG AGGATTCCTCAGTTTCACAATCCAGCCCGGTGCATACGGCGGTCTCTTCAGCGTCGCCGCAACCGCCTTCTGGCCGGCATTCTACGGCCACTTCATCGTC CCTCGAGTGGCCAGCTTCACTTCAAACCGAATCCGCAACGGCATCCCGCCCAAGTACAGAATGGGAGTCGGGATGGCCATATCCTTCCTGGCTAATGTGG TCGCCGGCTCGGTCGAGCACCACCGGCGGCAGAAAAAGACAACGTTGTCGGAGGAGACCGTGTCGGCGAACTTGCTGATCCCGAAGTTCTGCCTCATGGG GCTCGCTGATGCCTTCAACACCGTGGGCCAGATCAACTTCTACACCTCGCAATTCCCTGTGGGTAGCATGAAGACCATCGGGAACGCGTTGGCGTGGTTC TGGAAACGAGTACCTAACAACATGGCATCAGTTTTGCTAATCAGCGATAAATTGTCGGTCGTTGGATCATTTACAAAAATGATCTAA
AA sequence Show only first row Show all	>Lus10014537 pacid=23170868 polypeptide=Lus10014537 locus=Lus10014537.g ID=Lus10014537.BGIv1.0 annot-version=v1.0 MEPHEQNPHLPPVEEEEKQKEEEAAGHYDFDSSSPESSPDQKPVSIPQLEEEHNISTSPPPPPEKRDVDGHYEFESSPEPEFIQLHHHQQQQPPEEVVAA HNNNHNIAHPPPPSVTVQYSSPPRPLPPPQKDSPYRIRKALDESSSPESRAPTPDPATSSVGREEEGGGGGRRRRVPRPNLSILRKMKSEKIRRRSLIGC RSCGLVLCLVSLSVLAADKDQGWALDSFYRYREFRYCLTVNVIGFMYLSLQLADVAYTLIKGYVNPARNRRRDCFDFSLDQVMAYLLLSASTTAAYRVEE WESNWGKDQFPTMARASLSLSFLAFLAFAFTSLLSAAGGNCREPNNNQPARNAASSPSTGAGSLRLRSSCTQLWFQRRRYNLCNRRPVEMVPIAPPAAGA TAVMPVVAVRHHQSISSALGRSTRDVGEIVDRGTPINHDVVLEARIPPPKYDDRCHPLLVELAHQLHSDPRSARLRFIRTLPSHLRLFGGRFLGLVVLWV TALVPDAQPTCPATGDSCITPTTGQLFLLLTAFILTAIGAGGIRPCSPTFGEDQIRDSSDPDNRRKVEVFYSWYYTSVRVAMIVSIIVISTAQAYYGWGI ALGLPVVLMFAAVVVFLSGKSNLCTVRHVEGLKALIKVLPHWSTCIIVGIANNPGPIATLQAQVMDRGFLSFTIQPGAYGGLFSVAATAFWPAFYGHFIV PRVASFTSNRIRNGIPPKYRMGVGMAISFLANVVAGSVEHHRRQKKTTLSEETVSANLLIPKFCLMGLADAFNTVGQINFYTSQFPVGSMKTIGNALAWF WKRVPNNMASVLLISDKLSVVGSFTKMI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16180			Major facilitator superfamily ...		Lus10014537 [exp]	0	1
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	2.4	0.8567
AT1G57680			unknown protein		Lus10008842 [exp]	5.5	0.8064
AT4G01575			serine protease inhibitor, Kaz...		Lus10007864 [exp]	7.5	0.7972
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10026730 [exp]	8.9	0.7994
AT5G15890		TBL21	TRICHOME BIREFRINGENCE-LIKE 21...		Lus10034087 [exp]	16.9	0.7910
AT1G59970			Matrixin family protein (.1)		Lus10030662 [exp]	18.7	0.7983
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	21.2	0.8065
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Lus10032815 [exp]	21.6	0.7888
					Lus10024338 [exp]	21.9	0.7624
AT5G08530		CI51	51 kDa subunit of complex I (....		Lus10015807 [exp]	22.8	0.7958

Compare expression of checked genes

Lus10014537 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.