Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G07050 1351 / 0 CAS1 cycloartenol synthase 1 (.1) AT3G45130 1018 / 0 LAS1 lanosterol synthase 1 (.1) AT1G78955 940 / 0 CAMS1 camelliol C synthase 1 (.1) AT1G78960 925 / 0 ATLUP2 lupeol synthase 2 (.1) AT1G78950 908 / 0 ATLUP3 Terpenoid cyclases family protein (.1) AT1G66960 881 / 0 ATLUP5 Terpenoid cyclases family protein (.1) AT1G78970 865 / 0 ATLUP1, LUP1 ARABIDOPSIS THALIANA LUPEOL SYNTHASE 1, lupeol synthase 1 (.1.2) AT5G36150 803 / 0 ATPEN3 putative pentacyclic triterpene synthase 3 (.1) AT1G78500 793 / 0 ATPEN6 Terpenoid cyclases family protein (.1) AT4G15370 776 / 0 BARS1, ATPEN2 PENTACYCLIC TRITERPENE SYNTHASE 2, baruol synthase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032146 [exp] 1550 / 0 AT2G07050 1346 / 0.0 cycloartenol synthase 1 (.1) Lus10025684 [exp] 1313 / 0 AT2G07050 1198 / 0.0 cycloartenol synthase 1 (.1) Lus10008544 [exp] 871 / 0 AT2G07050 890 / 0.0 cycloartenol synthase 1 (.1) Lus10013546 [exp] 852 / 0 AT1G78955 1081 / 0.0 camelliol C synthase 1 (.1) Lus10026079 [exp] 843 / 0 AT1G78955 1002 / 0.0 camelliol C synthase 1 (.1) Lus10016441 [exp] 838 / 0 AT1G78955 1035 / 0.0 camelliol C synthase 1 (.1) Lus10033355 [exp] 800 / 0 AT1G78960 998 / 0.0 lupeol synthase 2 (.1) Lus10016440 [exp] 676 / 0 AT1G78950 838 / 0.0 Terpenoid cyclases family protein (.1) Lus10016439 [exp] 671 / 0 AT1G78960 874 / 0.0 lupeol synthase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G079300 [exp] 1367 / 0 AT2G07050 1333 / 0.0 cycloartenol synthase 1 (.1) Potri.018G148800 [exp] 1339 / 0 AT2G07050 1296 / 0.0 cycloartenol synthase 1 (.1) Potri.007G002200 [exp] 1239 / 0 AT2G07050 1186 / 0.0 cycloartenol synthase 1 (.1) Potri.006G079200 [exp] 1129 / 0 AT2G07050 1116 / 0.0 cycloartenol synthase 1 (.1) Potri.014G002400 [exp] 956 / 0 AT1G78950 1245 / 0.0 Terpenoid cyclases family protein (.1) Potri.007G002500 [exp] 931 / 0 AT1G78950 1244 / 0.0 Terpenoid cyclases family protein (.1) Potri.001G049100 [exp] 900 / 0 AT1G78955 1141 / 0.0 camelliol C synthase 1 (.1) Potri.011G085000 [exp] 899 / 0 AT1G78955 932 / 0.0 camelliol C synthase 1 (.1) Potri.007G002100 [exp] 899 / 0 AT1G78955 1074 / 0.0 camelliol C synthase 1 (.1) Potri.004G132500 [exp] 893 / 0 AT1G78955 935 / 0.0 camelliol C synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF00432 [flax] [poplar] Prenyltrans Prenyltransferase and squalene oxidase repeat
Representative CDS sequence Show only first row Show all	>Lus10014538 pacid=23170941 polypeptide=Lus10014538 locus=Lus10014538.g ID=Lus10014538.BGIv1.0 annot-version=v1.0 ATGTGGAAGCTGAAGATAGCAGAGGGAGGGAATCCATGGCTGAGGACCACCAACGATCATGTGGGAAGGCAAGTCTGGGAGTTCGATCCAGAGCTCGGAT CTCCCGAGGAGCTCTCGGCGATTGAGCTAGCTCGTCGAGATTTCACCAAGAATCGATTTGAGCATAAACACAGTGCCGATCTCCTTATGCGCATTCAGTT TTCCAAGGAGAATCCATTGGAACGTGTTTTACCTCAAGTTAAGCTAAAAGAGAAAGAAGATGTTACAGAGGAGGCAGTGACCACGACTTTAAGAAGGGCT TTAGATTACTATTCAACTATACAGGCTCATGATGGACACTGGCCGGGAGATTATGGAGGTCCTATGTTCCTCATGCCTGGTTTGGTTATTGCTCTGTCTG TGACTGGTGCAATGAATGCAGTTCTGTCGGAACAACACAAGAGTGAGATGCGCCGTTACCTCTACAATCACCAGAATGAAGATGGTGGCTGGGGCTTACA TATTGAAGGGCCCAGCACCATGTTTGGAAGTGTTTTAAGTTATGTCACGTTACGGTTGCTTGGCGAGGGAGCTAATGATGGAGAAGGAGCGATGGAAAAA GGGCGTGACTGGATCGTGAACCATGGTGGAGCTACTGCAATTACCTCTTGGGGGAAAATGTGGCTTTCAGTACTTGGAGTATTTGAGTGGTCTGGCAATA ATCCCCTACCCCCTGAGATTTGGCTCCTTCCTTATATGCTCCCAATCCATCCAGGAAGGATGTGGTGTCATTGCCGGATGGTCTACTTGCCCATGTCCTA TTTATACGGGAAGAGGTTCGTTGGACCCATCACCCCAACAGTTTTATCATTGAGAAAGGAGCTTTTCAGTACCCCATATCATGAAATTGACTGGAATCGA GCACGAAATGAATGTGCAAAGGAGGATCTATACTACCCACACCCTCTGATTCAAGATCTACTATGGGGATCCCTTCATAACTTTGTTGAACCTATTCTAA TGGCTTGGCCTGGAAAGAAGTTGAGAGAAAAGGCACTTCGGACTACACTAGAGCATATACACTATGAAGATGAAAACACCCGCTACATTTGCATAGGCCC TGTAAATAAGGTGTTAAATATGCTCTGTTGTTGGGTGGAGGACCCAAATTCGGAAGCTTTTAAGTTGCATCTTCCAAGGATTTCTGATTACCTTTGGGTT GCTGAGGATGGAATGAAAATGCAGGGGTATAATGGAAGTCAATTGTGGGACACCTCTTTTGCTGTTCAAGCAATTCTCTCAACCAACCTTATTGAGGAAT ACGCTTCAACTCTTAAAAAGGCACACGCATTCGTCAAGAACTCACAGGTCTTGGAAGACTGCCCTGGAGACCTTGATTATTGGTATAGACACATTTCCAA GGGTGCATGGCCTTTCTCAACTGCTGACCATGGATGGCCTATCTCAGACTGCACAGCTGAGGGATTGAAAGCAGCTCTTTTATTATCACAAAGTCCCTCA GAGCTTGTTGGAGAACCACTTGAAGCACAAAGATACTACAATGCTGTTAATGTGATTTTTTCATTGCAGAATGCTGATGGTAGCTTTGCAACGTATGAAC TCACAAGATCCTATAGCTGGATGGAGCTGATCAACCCAGCTGAAACATTCGGTGACATCGTTATTGATTACCCTTATGTTGAATGTACTTCGGCTGCAAT TCAAGCTTTAGTACCATTCAATAAAATTTATCCCGGACATCGGACAGCAGAAGTGGACACTTGTATCAAAAAGGCTGTTGCGTTCATTGAATCCATACAG GCTGCAGATGGCTCATGGTATGGCTCGTGGGCCGTTTGCTTTACGTACGCTACATGGTTTGGTATAAAAGGATTGGTCGCTAGTGGAAAGAGCTTCGATA ACAGCTCTAGCATTCAGAAAGCATGCAACTTTCTGTTGTCCAAGCAGTGTCCTTCGGGTGGCTGGGGAGAGAGCTATCTTTCATGTCAAACTAAGGTATA TCACAATCTTGAAGGTGATAACGGGCACGTGGTAAATACTGGATGGGCGATGCTGGCACTCATTGCTGCTGGCCAGGCCGAGAGAGACCCAGCTCCTTTA CACCGTGCAGCCCGGTTTTTGATAAATTCTCAAATGGAGAACGGAGATTTTCCACAGCAGGAAATCATGGGAGTTTTCAATAGGAACTGTATGATAACTT ATTCAGCTTACAGAGACATATTTCCAATATGGGCATTGGGAGAATACAGAACCAAAGTACTTCATGCTTCCTCGTAA
AA sequence Show only first row Show all	>Lus10014538 pacid=23170941 polypeptide=Lus10014538 locus=Lus10014538.g ID=Lus10014538.BGIv1.0 annot-version=v1.0 MWKLKIAEGGNPWLRTTNDHVGRQVWEFDPELGSPEELSAIELARRDFTKNRFEHKHSADLLMRIQFSKENPLERVLPQVKLKEKEDVTEEAVTTTLRRA LDYYSTIQAHDGHWPGDYGGPMFLMPGLVIALSVTGAMNAVLSEQHKSEMRRYLYNHQNEDGGWGLHIEGPSTMFGSVLSYVTLRLLGEGANDGEGAMEK GRDWIVNHGGATAITSWGKMWLSVLGVFEWSGNNPLPPEIWLLPYMLPIHPGRMWCHCRMVYLPMSYLYGKRFVGPITPTVLSLRKELFSTPYHEIDWNR ARNECAKEDLYYPHPLIQDLLWGSLHNFVEPILMAWPGKKLREKALRTTLEHIHYEDENTRYICIGPVNKVLNMLCCWVEDPNSEAFKLHLPRISDYLWV AEDGMKMQGYNGSQLWDTSFAVQAILSTNLIEEYASTLKKAHAFVKNSQVLEDCPGDLDYWYRHISKGAWPFSTADHGWPISDCTAEGLKAALLLSQSPS ELVGEPLEAQRYYNAVNVIFSLQNADGSFATYELTRSYSWMELINPAETFGDIVIDYPYVECTSAAIQALVPFNKIYPGHRTAEVDTCIKKAVAFIESIQ AADGSWYGSWAVCFTYATWFGIKGLVASGKSFDNSSSIQKACNFLLSKQCPSGGWGESYLSCQTKVYHNLEGDNGHVVNTGWAMLALIAAGQAERDPAPL HRAARFLINSQMENGDFPQQEIMGVFNRNCMITYSAYRDIFPIWALGEYRTKVLHASS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	0	1
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	1.4	0.8524
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	2.0	0.8383
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	3.5	0.7904
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	7.9	0.8058
AT4G32000			Protein kinase superfamily pro...		Lus10001937 [exp]	8.1	0.7560
AT5G42250			Zinc-binding alcohol dehydroge...		Lus10023572 [exp]	8.9	0.7576
AT2G32580			Protein of unknown function (D...		Lus10029975 [exp]	8.9	0.7660
AT3G13510			Protein of Unknown Function (D...		Lus10013410 [exp]	10.7	0.7717
AT3G27090			DCD (Development and Cell Deat...		Lus10041557 [exp]	14.8	0.7408
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	15.0	0.7693

Compare expression of checked genes

Lus10014538 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.