Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14760 994 / 0 AO L-aspartate oxidase (.1) AT5G66760 249 / 9e-74 SDH1-1 succinate dehydrogenase 1-1 (.1) AT2G18450 247 / 8e-73 SDH1-2 succinate dehydrogenase 1-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041739 [exp] 249 / 7e-74 AT5G66760 1153 / 0.0 succinate dehydrogenase 1-1 (.1) Lus10024015 [exp] 229 / 6e-66 AT5G66760 1103 / 0.0 succinate dehydrogenase 1-1 (.1) Lus10018901 [exp] 102 / 7e-26 AT5G14760 95 / 2e-24 L-aspartate oxidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348600 [exp] 1095 / 0 AT5G14760 996 / 0.0 L-aspartate oxidase (.1) Potri.007G026400 [exp] 243 / 2e-71 AT5G66760 1180 / 0.0 succinate dehydrogenase 1-1 (.1) Potri.005G123900 [exp] 243 / 2e-71 AT5G66760 1136 / 0.0 succinate dehydrogenase 1-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02910 [flax] [poplar] Succ_DH_flav_C Fumarate reductase flavoprotein C-term CL0063 [flax] [poplar] NADP_Rossmann PF00890 [flax] [poplar] FAD_binding_2 FAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10014539 pacid=23170963 polypeptide=Lus10014539 locus=Lus10014539.g ID=Lus10014539.BGIv1.0 annot-version=v1.0 ATGGCTATGAGTTTAGCAGCTGGAAGCAGCCATTCCAGATTCAACTTTGGGAGGCGGCTTCAGGGTTGTAGACAATCATCAAACTTTGCTGCTACAGAAT TTTCCGCACTTTCCTTCAATGGATGCTTGCACAACTCACGGTCACGAGGGGTTTACAAGGCTTTGCAGATGCAAAAATGCAATGCTTTCTCGAAATCTAT CTGTGGCATAGAGAACTGTAAATCAGTTGGTACAAGGAGGCTCAGTGTGACATCTTGCTTAAGAGATGGTTCCACAAAGTACTTTGATTTTGCGGTAATT GGAAGTGGAGTTGCAGGCCTACGGTACGCTCTCGAAGTCGCAAAGTATGGAACGGTTGCAGTTATTACGAAGGCCGAGCCTCACGAGAGCAACACAAATT ATGCTCAAGGCGGTGTTAGTGCCGTCTTGTGTCCAAGGGACTCGATCGAGAGTCACATGCAGGACACAATTGTAGCTGGTGCGTATCTATGTGACGAGGA GACTGTTAGGGTTGTTTGTACCGAAGGGCCCGAGAGAATTAGAGAACTTGTAGCTATGGGTGCAATGTTTGACCATGGGGAGGATGGGAATTTGCATCTA GCAAGAGAAGGAGGACACTCTCATCACAGAATTGTTCATGCTGCTGATATGACTGGAAGGGAGATTGAGCGAGCGTTGCTGCAAGCAGTCATCAATGATC CTAATATTTCGGTATTCCAACACCACTTCGCGATAGATCTGCTAACTTCACAGGATGGTCCTGACACAGTTTGCCATGGTATTGATACTTTGAACACTGA AACACAGGAGGTGGTTCGATTTATTTCCAGGGTCACATTACTTGCATCAGGCGGAGCCGGTCATATCTATCCTTGCACAACAAATCCGTTGGTGGCTACT GGAGATGGAATGGCTATGGCTCATAGAGCTCAAGCTGTGATTTCAAATATGGAGTTTGTTCAATTCCATCCAACTGCTTTGGCCGACGAGGGCCTTCCGA TCGAACCGAGTACACCTCGTGAAAATGCGTTTCTTATCACTGAAGCCGTCAGAGGTGATGGAGGTATCCTCTATAATTTGAGTATGGAAAGGTTCATGCC CCTGTACGACGAGAGAGCTGAGCTGGCGCCCCGGGATGTGGTAGCAAGAGGAATAGACGACCAGCTGAAACAACGAAACGAGAAGTATGTGCTGCTTGAC ATTAGCCACAGGCCAAGAGAAAAGATCTTATCGCACTTCCCCAACATAGCCGCCGAATGCCTCAAGCACGGCATCGATATAACCCGGCACCCTATCCCCG TGGTCCCGGCTGCACATTACATGTGCGGTGGAGTACGTGCCGGGCTCGAGGGGGAGACGAACGTTCGAGGTCTTTACGTGGCCGGTGAGGTTGCTTGCAC TGGTCTGCATGGTGCAAACAGACTCGCCAGTAATTCATTGCTCGAGGCGCTGGTTTTTGCTCGGAGGGCCGTCCAACCTTCGATTGATCACATGAAAAGT TCGAGACTTGATTTAAGCGCTTCGAGTCGTTGGACTCGCCCGGTTGCTCCCCATTCTCTTGGAAGCGAAACAATGGAGACTGTATTGGGGGAAACCGAGG CGGTGAGGAAAGAACTGCAATCGATCATGTGGAGATTCGTGGGGATCGTTCGTTCAACGACAATGCTGGAAACAGCGGAGGAAAGGGTGAGTGAGTTGGA AGCACGTTGGGAGAAGTTGTTATTTGAGTTAGGGTGGGAGCAGACTATGGTGGCAGTAGAGGCTTGTGAGATGAGGAACCTCTTCTGTTGTGCTAAGCTT GTGGTGAGCAGTGCCTTGTCAAGGCAGGAAAGCCGCGGCCTTCACTACACCATCGACTTCCCTGATCTCGAGGAAAGTAAGAGGCTGCCGACGGTTATCT TCCCTTCCCCTGTTAATGGTGGTACGTGGAGCTCGAGGCAATTACACACAGACAAAGAGGTTGTCTGTTAG
AA sequence Show only first row Show all	>Lus10014539 pacid=23170963 polypeptide=Lus10014539 locus=Lus10014539.g ID=Lus10014539.BGIv1.0 annot-version=v1.0 MAMSLAAGSSHSRFNFGRRLQGCRQSSNFAATEFSALSFNGCLHNSRSRGVYKALQMQKCNAFSKSICGIENCKSVGTRRLSVTSCLRDGSTKYFDFAVI GSGVAGLRYALEVAKYGTVAVITKAEPHESNTNYAQGGVSAVLCPRDSIESHMQDTIVAGAYLCDEETVRVVCTEGPERIRELVAMGAMFDHGEDGNLHL AREGGHSHHRIVHAADMTGREIERALLQAVINDPNISVFQHHFAIDLLTSQDGPDTVCHGIDTLNTETQEVVRFISRVTLLASGGAGHIYPCTTNPLVAT GDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIEPSTPRENAFLITEAVRGDGGILYNLSMERFMPLYDERAELAPRDVVARGIDDQLKQRNEKYVLLD ISHRPREKILSHFPNIAAECLKHGIDITRHPIPVVPAAHYMCGGVRAGLEGETNVRGLYVAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMKS SRLDLSASSRWTRPVAPHSLGSETMETVLGETEAVRKELQSIMWRFVGIVRSTTMLETAEERVSELEARWEKLLFELGWEQTMVAVEACEMRNLFCCAKL VVSSALSRQESRGLHYTIDFPDLEESKRLPTVIFPSPVNGGTWSSRQLHTDKEVVC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10014539 [exp]	0	1
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	2.0	0.8170
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	3.9	0.8268
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10019387 [exp]	7.7	0.8499
					Lus10004560 [exp]	25.7	0.7419
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Lus10018382 [exp]	44.0	0.7943
AT1G32160			Protein of unknown function (D...		Lus10000084 [exp]	106.6	0.7670
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10010978 [exp]	111.4	0.7434
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	138.1	0.7447

Compare expression of checked genes

Lus10014539 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.