Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53480 105 / 2e-26 ARM repeat superfamily protein (.1) AT3G08947 74 / 1e-15 ARM repeat superfamily protein (.1) AT3G08943 71 / 2e-14 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034318 [exp] 133 / 3e-36 AT5G53480 1332 / 0.0 ARM repeat superfamily protein (.1) Lus10041453 [exp] 133 / 4e-36 AT5G53480 1334 / 0.0 ARM repeat superfamily protein (.1) Lus10008863 [exp] 107 / 7e-27 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10008864 [exp] 106 / 9e-27 AT5G53480 1443 / 0.0 ARM repeat superfamily protein (.1) Lus10023246 [exp] 103 / 8e-26 AT5G53480 1449 / 0.0 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G010400 [exp] 102 / 3e-25 AT5G53480 1547 / 0.0 ARM repeat superfamily protein (.1) Potri.012G017500 [exp] 99 / 2e-24 AT5G53480 1531 / 0.0 ARM repeat superfamily protein (.1) Potri.016G123600 [exp] 61 / 7e-11 AT3G08943 1288 / 0.0 ARM repeat superfamily protein (.1) Potri.006G103300 [exp] 58 / 4e-10 AT3G08943 1294 / 0.0 ARM repeat superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014540 pacid=23170853 polypeptide=Lus10014540 locus=Lus10014540.g ID=Lus10014540.BGIv1.0 annot-version=v1.0 ATGGCTCTTTACTTCCTTGCAAAAGGCTATTCAGATTCAGATTCTTGTCCATTAACTCCGTATTTTCAGGAAATTGTTCGGTCCTTGCTGGCTGCTACTC GCATCGATGCTACTCCGCGGGGGATGTTTAAGGATGGTGCATATGCAGCTCCAAGTAAGGTTGTAAGATGCTCGAGTAATTACGAATCGGAATCTTCGGT TTTGAGATTAGTTCAGGACATCAAAGATGAGCTCTTTGAGTGTCTTGAGAGGTCACACATAGGGAAACAGAACCATCTTTCTGGGTGTCTACAAGTGCTC ATTAGGAAGCTAGGAGCTTCTGATTCAGAACAGACCAAAGTTTCGTTGATGAACCATGCTGATGAAGTAATGACAGTCTTTCTTAGGGTTTTGAAGACGC CTCTGAATGTTGTCTGTGTATCGGCGATATTGCGTTGGCTATCGGTCCGGAGTTCGACAAGTATCTGGGGCAGGCGCTCGAAATCGCTGCGGATTCTGCA TGGACAGAAGGTGCTGCTCGTGACGGTCGAAGGATCGAGGACTGGAGCAGAAATTGGGTGA
AA sequence Show only first row Show all	>Lus10014540 pacid=23170853 polypeptide=Lus10014540 locus=Lus10014540.g ID=Lus10014540.BGIv1.0 annot-version=v1.0 MALYFLAKGYSDSDSCPLTPYFQEIVRSLLAATRIDATPRGMFKDGAYAAPSKVVRCSSNYESESSVLRLVQDIKDELFECLERSHIGKQNHLSGCLQVL IRKLGASDSEQTKVSLMNHADEVMTVFLRVLKTPLNVVCVSAILRWLSVRSSTSIWGRRSKSLRILHGQKVLLVTVEGSRTGAEIG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53480			ARM repeat superfamily protein...		Lus10014540 [exp]	0	1
AT5G52975			Protein of unknown function (D...		Lus10027141 [exp]	1.4	0.7570
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10020822 [exp]	5.5	0.7545
					Lus10022112 [exp]	11.6	0.6651
AT3G53240		AtRLP45	receptor like protein 45 (.1)		Lus10043328 [exp]	11.8	0.6595
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Lus10004657 [exp]	12.5	0.7002
AT5G55590		QRT1	QUARTET 1, Pectin lyase-like s...		Lus10007113 [exp]	12.6	0.6700
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	15.1	0.6649
AT4G04980			unknown protein		Lus10033704 [exp]	16.7	0.6244
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Lus10017587 [exp]	21.9	0.6493
AT1G48020		ATPMEI1	ARABIDOPSIS THALIANA PECTIN ME...		Lus10001658 [exp]	24.1	0.6234

Compare expression of checked genes

Lus10014540 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.