Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27880 86 / 8e-20 Protein of unknown function (DUF1645) (.1) AT1G23710 77 / 2e-16 Protein of unknown function (DUF1645) (.1) AT1G70420 69 / 2e-13 Protein of unknown function (DUF1645) (.1) AT3G62630 52 / 1e-07 Protein of unknown function (DUF1645) (.1) AT5G62770 44 / 4e-05 Protein of unknown function (DUF1645) (.1) AT2G15760 41 / 0.0004 Protein of unknown function (DUF1645) (.1) AT3G01513 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032145 [exp] 211 / 7e-70 AT3G27880 81 / 4e-19 Protein of unknown function (DUF1645) (.1) Lus10029153 [exp] 60 / 2e-10 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10013011 [exp] 55 / 1e-08 AT1G70420 159 / 1e-47 Protein of unknown function (DUF1645) (.1) Lus10030876 [exp] 51 / 2e-07 AT1G70420 147 / 5e-43 Protein of unknown function (DUF1645) (.1) Lus10020690 [exp] 47 / 7e-06 AT3G62630 232 / 1e-72 Protein of unknown function (DUF1645) (.1) Lus10029855 [exp] 47 / 7e-06 AT3G62630 236 / 2e-74 Protein of unknown function (DUF1645) (.1) Lus10019892 [exp] 46 / 1e-05 AT2G15760 202 / 2e-62 Protein of unknown function (DUF1645) (.1) Lus10030612 [exp] 46 / 1e-05 AT1G70420 155 / 8e-46 Protein of unknown function (DUF1645) (.1) Lus10027912 [exp] 44 / 6e-05 AT2G15760 166 / 1e-48 Protein of unknown function (DUF1645) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G081000 [exp] 81 / 1e-17 AT1G23710 104 / 5e-26 Protein of unknown function (DUF1645) (.1) Potri.015G076400 [exp] 73 / 6e-15 AT1G23710 91 / 6e-21 Protein of unknown function (DUF1645) (.1) Potri.009G102101 [exp] 72 / 2e-14 AT1G23710 74 / 4e-15 Protein of unknown function (DUF1645) (.1) Potri.008G156901 [exp] 69 / 7e-14 AT1G23710 57 / 1e-09 Protein of unknown function (DUF1645) (.1) Potri.010G041300 [exp] 59 / 3e-10 AT1G23710 169 / 5e-51 Protein of unknown function (DUF1645) (.1) Potri.009G105400 [exp] 45 / 2e-05 AT2G15760 100 / 6e-24 Protein of unknown function (DUF1645) (.1) Potri.004G143500 [exp] 44 / 4e-05 AT2G15760 137 / 1e-37 Protein of unknown function (DUF1645) (.1) Potri.005G019600 [exp] 44 / 5e-05 AT3G62630 218 / 5e-67 Protein of unknown function (DUF1645) (.1) Potri.013G010400 [exp] 43 / 0.0002 AT3G62630 199 / 7e-60 Protein of unknown function (DUF1645) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07816 [flax] [poplar] DUF1645 Protein of unknown function (DUF1645)
Representative CDS sequence Show only first row Show all	>Lus10014541 pacid=23170942 polypeptide=Lus10014541 locus=Lus10014541.g ID=Lus10014541.BGIv1.0 annot-version=v1.0 ATGCAGGACGAAACCTCCGCCGCCGTCTCATTCTGCCCAAGCTTTAGTAGCTATTCCTGCGGCCACCGTCTCGCTGATGTCGCTGCCGCCTTGGCGGCTG ACGACGACGGGTTTGAATTCGAGACTGAGCAAGGACGCCTGCCCTCGTCCCCTGTTTTTCCGGTATTCAATCGAGATCTACTGCACGGCGATGATCTGTC GTCGGAGGTTACTGAGCTACGGCCTCTGAGCGAGTTATTCTTGGACGATCGAGATCCGGAGACGTCCTTCTCTTCTTCTTCATCCGAGGCGGGCGATCTG GAAGGGGCGCCGGAAGGAAGCTACTGCGTCTGGACGCCGAAATCGATTACGGAATCTTCAGTAATCGGAGCGTCGCCTTCTCCGGGGAGATGCGTGAAGA GCAATTCGACGGGATCGTCGTCGTCGAAGCCGCGGTGGCGACTGCGAGATTTGCTCCGTAGATCCAGCAGCGACGGCAAAGCGGTGTCGCATTTCTTAGT CAATCCGAACTCTAGTAGTAGTTGTGGTAAAGTCGATGAAGTCAAATTGGGGAAAAAGATAGATGAGAAGTCTCAGGCGAGAAAACCACCGCCGGCGGGA AAATCGACGAGGAAGCAATTGTCGGCGCATGAGGTGTTCTACACGAAGAGCAAAGCGTTGAAGGAGGAGGATAAGAGGAGGTCGTATTTGCCGTACCGGC AAGATCTCGTCGGGTTTTTCTCAACGGCTAACGGTTTCACCAGGACGTTCACTCCATTTTAG
AA sequence Show only first row Show all	>Lus10014541 pacid=23170942 polypeptide=Lus10014541 locus=Lus10014541.g ID=Lus10014541.BGIv1.0 annot-version=v1.0 MQDETSAAVSFCPSFSSYSCGHRLADVAAALAADDDGFEFETEQGRLPSSPVFPVFNRDLLHGDDLSSEVTELRPLSELFLDDRDPETSFSSSSSEAGDL EGAPEGSYCVWTPKSITESSVIGASPSPGRCVKSNSTGSSSSKPRWRLRDLLRRSSSDGKAVSHFLVNPNSSSSCGKVDEVKLGKKIDEKSQARKPPPAG KSTRKQLSAHEVFYTKSKALKEEDKRRSYLPYRQDLVGFFSTANGFTRTFTPF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	0	1
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	2.4	0.8462
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	3.5	0.8439
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	3.9	0.8550
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Lus10007815 [exp]	5.1	0.7984
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10028157 [exp]	10.2	0.8453
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	11.4	0.8154
AT3G19450		CAD-C, ATCAD4	CINNAMYL ALCOHOL DEHYDROGENASE...		Lus10019811 [exp]	14.5	0.8446
					Lus10021100 [exp]	15.4	0.8456
AT2G32720		B5 #4, B5#4, AT...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10011858 [exp]	17.2	0.8408
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Lus10010997 [exp]	19.1	0.8140

Compare expression of checked genes

Lus10014541 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.