Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14720 892 / 0 Protein kinase superfamily protein (.1) AT1G79640 596 / 0 Protein kinase superfamily protein (.1.2) AT1G70430 545 / 0 Protein kinase superfamily protein (.1) AT4G10730 529 / 4e-179 Protein kinase superfamily protein (.1) AT4G24100 504 / 2e-169 Protein kinase superfamily protein (.1) AT1G23700 390 / 2e-128 Protein kinase superfamily protein (.1) AT4G14480 336 / 3e-107 Protein kinase superfamily protein (.1) AT1G53165 232 / 3e-66 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT3G15220 229 / 4e-65 Protein kinase superfamily protein (.1) AT1G69220 219 / 1e-60 SIK1 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032144 [exp] 1248 / 0 AT5G14720 838 / 0.0 Protein kinase superfamily protein (.1) Lus10026108 [exp] 546 / 0 AT1G79640 789 / 0.0 Protein kinase superfamily protein (.1.2) Lus10000416 [exp] 543 / 0 AT1G79640 760 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001677 [exp] 534 / 3e-178 AT4G10730 892 / 0.0 Protein kinase superfamily protein (.1) Lus10017326 [exp] 525 / 7e-175 AT4G10730 883 / 0.0 Protein kinase superfamily protein (.1) Lus10033230 [exp] 513 / 2e-172 AT4G24100 895 / 0.0 Protein kinase superfamily protein (.1) Lus10000878 [exp] 498 / 1e-166 AT4G24100 887 / 0.0 Protein kinase superfamily protein (.1) Lus10021882 [exp] 330 / 4e-105 AT4G14480 501 / 6e-175 Protein kinase superfamily protein (.1) Lus10041162 [exp] 224 / 9e-68 AT4G14480 310 / 1e-103 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G349300 [exp] 992 / 0 AT5G14720 963 / 0.0 Protein kinase superfamily protein (.1) Potri.001G037900 [exp] 573 / 0 AT1G79640 858 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G186700 [exp] 563 / 0 AT1G79640 862 / 0.0 Protein kinase superfamily protein (.1.2) Potri.003G146000 [exp] 531 / 9e-180 AT4G10730 902 / 0.0 Protein kinase superfamily protein (.1) Potri.001G084700 [exp] 526 / 8e-178 AT4G10730 905 / 0.0 Protein kinase superfamily protein (.1) Potri.008G163800 [exp] 348 / 2e-111 AT4G14480 504 / 1e-175 Protein kinase superfamily protein (.1) Potri.004G194700 [exp] 275 / 4e-84 AT4G14480 356 / 1e-118 Protein kinase superfamily protein (.1) Potri.016G049500 [exp] 276 / 7e-84 AT4G14480 368 / 2e-122 Protein kinase superfamily protein (.1) Potri.011G116300 [exp] 228 / 1e-64 AT3G15220 817 / 0.0 Protein kinase superfamily protein (.1) Potri.001G397600 [exp] 226 / 6e-64 AT3G15220 828 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10014542 pacid=23170925 polypeptide=Lus10014542 locus=Lus10014542.g ID=Lus10014542.BGIv1.0 annot-version=v1.0 ATGCATGTGTTGTTCTTCTTCCTAACTGGGTTGCTTATACTTTACCACTTCCATGGAACTTGCATCAGATCTTTGGTTGATCTTTCCTTCCATGTCTTAA GAGCTGGAGTGTTGTTAGGTGCAACTGTTACGCCGAATATTACAAGGTTGGTTTCTGTGAGTCGTGGCTTAGTTGTCGTGCAAGGAAAATTGGAAGGTGT TGATGGTTTGCTGCAAAAGGCAGCTATGGAGAGCGTTTTGGAGAAAAAATATCCTTTAAGTGCTAGCGATTATGAATTGTATGAAGAGGTCGGGGAAGGT GTCAGTGCCTCTGTATATAGGGCTCTCTGTGTTCCACTCAATGAGGTTGTTGCAATTAAGGTTCTGGATTTGGAGAAGTGCAACAATGACCTCGATGGTG TCCGGCGGGAGGTACAGACAATGAGTTTGATCGATCATCCCAATTTGCTACGTGCACATTGCTCATTCACTGCTGGCCACTGCCTTTGGGTTGTAATGCC GTACATGGCTGGGGGTTCGTGCCTTCATATTATGAAATCTTCTTATCCGGAAGGTTTTGAAGAGCCTGTTATTGCCACGTTATTGCGCGAAACTCTTAAA GCTCTTGTCTATCTTCATTTCCACGGTCACATACATCGAGATGTTAAGGCTGGAAACATTTTGATTGATTCTAATGGTGCGGTCAAGCTAGCTGATTTTG GAGTGTCAGCATGTATGTTTGATACTGGAGATAGGCAACGGTCGAGAAATACTTTTGTGGGGACTCCATGCTGGATGGCTCCTGAAGTTATGCAGCAGTT GCATGGCTATGACTTTAAAGCAGACATTTGGTCACTTGGAATAACAGCCCTGGAACTTGCTCATGGCCATGCACCTTTCTCCAAGTACCCACCAATGAAA GTTTTGCTGATGACCTTACAGAATGCTCCTCCAGGTCTGGATTATGAAAGAGATAAAAGATTTTCAAAGTCATTTAAAGAGTTGGTAGCCGCTTGCTTGG TGAAGGATCCAAAGAAACGACCCTCCTCAGAAAAGCTTTTGAAGCACCATTTTTTCAAACATGCACGGTCTACTGATTATGTTGCTCGCTCGATAATTGA TGGACTCTCACCTTTAGGGGAACGTTTTAGGATACTGAAGGCAAAAGAAGCGGATCTTCTGATGCAAAACAAGCCGCAATATGAGGATAAAGAGCAATTA TCTCAGCAAGAGTACATAAGAGGGATCAGTGCTTGGAATTTCAATCTGGAGGATTTGAAAAATCAGGCTGCTCTTATTCAGGATGATTGTAGCATGGAAG AGCAAGGTATCTCTGAAAAGCAAATTGACCAGCAAGACAGTGAGCTTCTTGACTATAAGCTATCCGATAAAGCAGCTAACCACACAACACCTACTATTAA CGAGGATGAGTACCCTGATGTTCCTGATTTGGAAAGTTCATTTGCTTCATTTCCTATTAAACCTCTTCAAGCACTAAGAGGTTGTTTTGATGTCGGTGAG GATGATGAGGGTGCAACTACTCCGGATTTGAAAGGTAATAGTGAAGCAGAACTGGAGCAGCAGGTAATTATGGGGCCAAATACAACAGGACAAGATATTG AAACAAATGGAGTTCAGAATATTGGACGTACTAGCACTTTACAACGCCAAATTAGTAACGAGAACAGAAGATTTTCGAGTGGCCCAATGATAGCAGATAA CAGTCTTTCTCAGCCAAAGTTTTCCAGCGAGGAAAACAGGGATTTTGTAAAGACGCGGTACCAATCTGACCGAAACTATAGTGGTCCTATGTTATATCGG CAGGAGAGAGATACCAACAACCACTCATCTGCAGAGGATACTGCAGATGGAGCCATTGTTCAACGTAAGGGACGGTTTAAGGTTACCTCTGCTGACCTTA GTCCTAAGGGTTCAACTAGTCCGACATCATCAAACGTTACAACTGCTGCGGTTGTCCCATCACTGCAGTGCATCTTACAGCAGAACACCATGCAAAGGGA GGAAATCATTAAACTGATCAAGTATGTGGATCAATCATCAGGCAAGCAGACTGAGACGGTTGAGTCTTCCTTCAATGAAGTTTTGCAGGTATCTCCCAAG GAGAAGGAGCTGCAGTCTCAGGTGTTTGGTCTGCAACAGAGGATTGCAATCCTCTTTGACGAATGGCAGAAACAAAAGATGATAAACGCTCAGGTATATG ATTCTTTCCCTCTCGAGTGGTTTCTCCGAATTTGA
AA sequence Show only first row Show all	>Lus10014542 pacid=23170925 polypeptide=Lus10014542 locus=Lus10014542.g ID=Lus10014542.BGIv1.0 annot-version=v1.0 MHVLFFFLTGLLILYHFHGTCIRSLVDLSFHVLRAGVLLGATVTPNITRLVSVSRGLVVVQGKLEGVDGLLQKAAMESVLEKKYPLSASDYELYEEVGEG VSASVYRALCVPLNEVVAIKVLDLEKCNNDLDGVRREVQTMSLIDHPNLLRAHCSFTAGHCLWVVMPYMAGGSCLHIMKSSYPEGFEEPVIATLLRETLK ALVYLHFHGHIHRDVKAGNILIDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSLGITALELAHGHAPFSKYPPMK VLLMTLQNAPPGLDYERDKRFSKSFKELVAACLVKDPKKRPSSEKLLKHHFFKHARSTDYVARSIIDGLSPLGERFRILKAKEADLLMQNKPQYEDKEQL SQQEYIRGISAWNFNLEDLKNQAALIQDDCSMEEQGISEKQIDQQDSELLDYKLSDKAANHTTPTINEDEYPDVPDLESSFASFPIKPLQALRGCFDVGE DDEGATTPDLKGNSEAELEQQVIMGPNTTGQDIETNGVQNIGRTSTLQRQISNENRRFSSGPMIADNSLSQPKFSSEENRDFVKTRYQSDRNYSGPMLYR QERDTNNHSSAEDTADGAIVQRKGRFKVTSADLSPKGSTSPTSSNVTTAAVVPSLQCILQQNTMQREEIIKLIKYVDQSSGKQTETVESSFNEVLQVSPK EKELQSQVFGLQQRIAILFDEWQKQKMINAQVYDSFPLEWFLRI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14720			Protein kinase superfamily pro...		Lus10014542 [exp]	0	1
AT1G21710		OGG1, ATOGG1	ARABIDOPSIS 8-OXOGUANINE-DNA G...		Lus10018137 [exp]	5.2	0.8702
AT4G39420			unknown protein		Lus10005786 [exp]	8.4	0.8965
AT4G39420			unknown protein		Lus10030711 [exp]	11.2	0.8864
AT4G33210		SLOMO	SLOW MOTION, F-box family prot...		Lus10038067 [exp]	12.0	0.8648
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	13.6	0.8303
AT2G45540			WD-40 repeat family protein / ...		Lus10009305 [exp]	15.3	0.8842
AT4G30020			PA-domain containing subtilase...		Lus10006973 [exp]	17.9	0.8419
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Lus10038405 [exp]	22.5	0.8826
AT1G35220			unknown protein		Lus10010355 [exp]	23.1	0.8735
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	23.2	0.8730

Compare expression of checked genes

Lus10014542 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.