Plant FIBer expression Database

Lus10014543 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G14710 162 / 1e-51 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G349500
[exp]
162 / 2e-51 AT5G14710 175 / 7e-58 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10178 PAC3 Proteasome assembly chaperone 3
Representative CDS sequence
>Lus10014543 pacid=23170957 polypeptide=Lus10014543 locus=Lus10014543.g ID=Lus10014543.BGIv1.0 annot-version=v1.0
ATGGGCAGCAGCGTCGACAAACACTTTCCAGTTCCTCATCAAAGTTTCTCTCTTGAAATTAAAGGGAACAAGACGGATGTAGTCATTTGCGGTTATGACG
ACCACATTCTTGTGATTGCAACTCAAATAGGAACTATGGGGACAGTACTACATGCCAGGAAGGAGGAAGGAATGTCAAGTGAGCCAACTTTCAACGTGTC
CGTAATATTCGGGAAACGAGATGAGCCAATGCTAGTCGCCTGTGCTCGGCAACTAATCGAACAAATGAGTAGCTCCGGATCATCTAGGCCATTGGTTCTC
TCTCTTGGTCTTAAGGATCACTCCATGGAGACGATGAAAGGAGTCGTATCTACTGTGCTAGAACATCGAACATGGAAGGAGGAAGGAATGTCAAGTGAGC
CAACTTTCAACGTGTCCGTAATATTCGGGAAACGAGATGAGCCAATGCTAGTCGCCTGTGCTCGGCAACTAATCGAACAAATGAGTAGCTCCGGATCATC
TAGGCCATTGGTTCTCTCTCTTGGTCTTAAGGATCACTCCATGGAGACGATGAAAGGAGTCGTATCTACTGTGCTAGAACATCGAACATGGTAG
AA sequence
>Lus10014543 pacid=23170957 polypeptide=Lus10014543 locus=Lus10014543.g ID=Lus10014543.BGIv1.0 annot-version=v1.0
MGSSVDKHFPVPHQSFSLEIKGNKTDVVICGYDDHILVIATQIGTMGTVLHARKEEGMSSEPTFNVSVIFGKRDEPMLVACARQLIEQMSSSGSSRPLVL
SLGLKDHSMETMKGVVSTVLEHRTWKEEGMSSEPTFNVSVIFGKRDEPMLVACARQLIEQMSSSGSSRPLVLSLGLKDHSMETMKGVVSTVLEHRTW

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G14710 unknown protein Lus10014543
[exp]
0 1
AT5G12320 ankyrin repeat family protein ... Lus10036033
[exp]
2.4 0.8063
AT1G67000 Protein kinase superfamily pro... Lus10026761
[exp]
3.2 0.7897
AT3G13000 Protein of unknown function, D... Lus10037293
[exp]
4.0 0.8093
AT1G11755 LEW1 LEAF WILTING 1, Undecaprenyl p... Lus10042338
[exp]
4.2 0.7904
AT2G02570 nucleic acid binding;RNA bindi... Lus10024458
[exp]
7.4 0.8249
AT1G47890 AtRLP7 receptor like protein 7 (.1) Lus10016402
[exp]
12.4 0.7742
AT1G70870 Polyketide cyclase/dehydrase a... Lus10008931
[exp]
20.9 0.7217
AT3G62450 unknown protein Lus10021958
[exp]
21.8 0.7988
AT5G45110 ATNPR3, NPR3 NPR1-like protein 3 (.1) Lus10036200
[exp]
23.0 0.7975
AT2G02040 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDO... Lus10040100
[exp]
23.5 0.6911

Lus10014543 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.