Plant FIBer expression Database

Lus10014544 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01516 61 / 1e-11 unknown protein
AT5G14690 61 / 2e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032143
[exp]
211 / 2e-69 AT3G01516 109 / 5e-30 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G349700
[exp]
89 / 3e-22 AT3G01516 71 / 2e-15 unknown protein
PFAM info
Representative CDS sequence
>Lus10014544 pacid=23170969 polypeptide=Lus10014544 locus=Lus10014544.g ID=Lus10014544.BGIv1.0 annot-version=v1.0
ATGCAGGAACGACGCCGTCCAGAAATCATCAGAAGAAAGAGCCTGTCAACAGCGGCGTGCAGTACCAGCAGCGAAGAATGCGAAAGCGACGACGTAGTGG
CAGTCCGACCGTCCACGTCATCGTCGAAAGAAGATTGCTGCTGTAGCCCGGCATGCACAGCTGGCGCAATAGCCGACTGCGTGCCGCTCTGCTGCTGCCC
GTGCGCGCTTTTCAACTTCCTCACCTTAGCATTCGTCAAGGTCCCTTGGTCGGTGGGGCGGAGGTGCGTCGGGGTGATTATGCGGCGGCGGCGGAAGAAG
AAGAAGGCGAAGATTAGTGCTGGTACGGTGATGTTGGAGGTGGTGGCCGGCGGCGGAGGAGGACGGCGACGGAGGGAAGAGGAGGAAGACGGGGATGAGG
ATGTTATATATGTGGTGGAGAGATCTGACGGTAGCCGGAGTTTGAGGGTGGCCGGAGATGATGATGATGAGGACGGTGGGGCCGGCGGAGGCGGCGGTGG
TGGACGGAGGATGAGTGCGAAATTTGAGGCGGAGAAAGTATGGTTGGAGCTTTACCAGGTTGGTCATTTGGGATTTGGTAGGGTGTCTTTTACCGGCGTA
CCCGCCCATTATAACTCTTAA
AA sequence
>Lus10014544 pacid=23170969 polypeptide=Lus10014544 locus=Lus10014544.g ID=Lus10014544.BGIv1.0 annot-version=v1.0
MQERRRPEIIRRKSLSTAACSTSSEECESDDVVAVRPSTSSSKEDCCCSPACTAGAIADCVPLCCCPCALFNFLTLAFVKVPWSVGRRCVGVIMRRRRKK
KKAKISAGTVMLEVVAGGGGGRRRREEEEDGDEDVIYVVERSDGSRSLRVAGDDDDEDGGAGGGGGGGRRMSAKFEAEKVWLELYQVGHLGFGRVSFTGV
PAHYNS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G01516 unknown protein Lus10014544
[exp]
0 1
AT3G01516 unknown protein Lus10032143
[exp]
3.0 0.9525
AT4G32890 GATA GATA9 GATA transcription factor 9 (.... Lus10011430
[exp]
5.0 0.9627
AT1G63940 MDAR6 monodehydroascorbate reductase... Lus10028763
[exp]
5.9 0.9577
AT3G19990 unknown protein Lus10028681
[exp]
7.2 0.9621
AT5G17820 Peroxidase superfamily protein... Lus10018375
[exp]
7.5 0.9376
AT5G63090 AS2 LOBB, LOB Lateral organ boundaries (LOB)... Lus10001139
[exp]
10.0 0.9502
AT5G54370 Late embryogenesis abundant (L... Lus10017577
[exp]
10.1 0.9603
AT1G80530 Major facilitator superfamily ... Lus10017480
[exp]
10.2 0.9589
AT5G49950 alpha/beta-Hydrolases superfam... Lus10037322
[exp]
12.8 0.9476
AT3G19990 unknown protein Lus10028680
[exp]
14.9 0.9540

Lus10014544 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.