Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40340 182 / 9e-47 Tudor/PWWP/MBT superfamily protein (.1) AT3G27860 165 / 2e-42 Tudor/PWWP/MBT superfamily protein (.1) AT3G09670 129 / 2e-30 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G02950 123 / 7e-29 Tudor/PWWP/MBT superfamily protein (.1) AT5G27650 119 / 6e-27 Tudor/PWWP/MBT superfamily protein (.1) AT3G05430 117 / 2e-26 Tudor/PWWP/MBT superfamily protein (.1) AT3G48190 89 / 2e-17 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT2G48160 54 / 9e-07 Tudor/PWWP/MBT domain-containing protein (.1) AT3G63070 47 / 9e-05 Tudor/PWWP/MBT domain-containing protein (.1) AT3G61740 46 / 0.0002 SDG14, ATX3 SET domain protein 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032141 [exp] 1774 / 0 AT5G40340 187 / 3e-48 Tudor/PWWP/MBT superfamily protein (.1) Lus10023486 [exp] 162 / 3e-40 AT5G02950 207 / 2e-55 Tudor/PWWP/MBT superfamily protein (.1) Lus10040367 [exp] 160 / 1e-39 AT5G02950 209 / 8e-56 Tudor/PWWP/MBT superfamily protein (.1) Lus10016267 [exp] 143 / 8e-35 AT3G09670 276 / 9e-82 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10012010 [exp] 136 / 7e-33 AT3G09670 283 / 2e-85 Tudor/PWWP/MBT superfamily protein (.1.2) Lus10015177 [exp] 113 / 4e-25 AT5G27650 634 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10031498 [exp] 112 / 6e-25 AT5G27650 633 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Lus10002382 [exp] 89 / 2e-17 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Lus10042113 [exp] 88 / 3e-17 AT3G48190 115 / 1e-25 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G130600 [exp] 520 / 5e-168 AT5G40340 220 / 5e-59 Tudor/PWWP/MBT superfamily protein (.1) Potri.010G216900 [exp] 172 / 2e-43 AT3G09670 235 / 7e-65 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.008G044600 [exp] 165 / 4e-41 AT5G02950 279 / 2e-80 Tudor/PWWP/MBT superfamily protein (.1) Potri.012G081500 [exp] 148 / 5e-36 AT3G48190 131 / 2e-30 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.006G131800 [exp] 136 / 2e-32 AT3G09670 236 / 2e-66 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.016G085500 [exp] 129 / 1e-30 AT3G09670 260 / 4e-77 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.005G026800 [exp] 119 / 5e-27 AT5G27650 431 / 1e-132 Tudor/PWWP/MBT superfamily protein (.1) Potri.013G018700 [exp] 108 / 1e-23 AT5G27650 687 / 0.0 Tudor/PWWP/MBT superfamily protein (.1) Potri.008G209900 [exp] 60 / 8e-10 AT5G27650 149 / 1e-41 Tudor/PWWP/MBT superfamily protein (.1) Potri.014G138700 [exp] 58 / 4e-08 AT3G63070 400 / 5e-117 Tudor/PWWP/MBT domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00855 [flax] [poplar] PWWP PWWP domain
Representative CDS sequence Show only first row Show all	>Lus10014546 pacid=23170929 polypeptide=Lus10014546 locus=Lus10014546.g ID=Lus10014546.BGIv1.0 annot-version=v1.0 ATGAATGTTATTCGAACGACTATAGCTGGAAGTTCCTCTCTTACGGGAAAAGAACCGAAAGATCCAGGCGGGGAAGGCTTTAGGGATGCTACTACGACGA ATAATCGGGTTGGGAATGGAGTTTGGGTTCGGCCATGTGACAAAGCTGGGTTTGGTGCGGATGATGTTTCTGCTACGAGTAAGAGTTTGAGTGAGAAAGG TTTGGGTAGCGGGAAAATTGGTCCCATGGTTGATGGTAATGGAGAAAGTCTTGAGGACTCTGAGATGAATGGGGTTTCTTCTCTGCTTGAGATGCAGCAA AGTGGGAGATACCCTGGATTGGACTCTGTGTTGAATGTGATTGATAAGAGTGAGAACAGTGGATATGGTAATGATGGATTAGATGAAAAAGTTAAGGGAG GAAATAAGGGCAAGAAAGATATGGAGTGTGAGGGGAATTCGGAGGACGAAATGTATGAGAATGAGTTTGACGTGGGTGATTTCATTTGGGGGAAGATTAA GAGCCATCCATGGTGGCCAGGGAGGGTTTATGATCCGTTGGATGCATCCGAGTATGCCAAGAAAGTTAAGCATGGAGAAGACAAGATACTTGTAGCTTAC TTTGGCGACGAAACTTTTGCCTGGTGTAATCCTTCCCAGCTGAAGCCCTTCCATGAGAATTTTGTGGAGATGTCAAATCAGAGTACCTCCAAGAACTTTG TCAACGCTGTTGAAAAGGCTCTGGAAGAGGTTGGTAGATCAGTTGACTTGAGGTTGACTTGTCCTTGTGTTCCCAGGGACAATTTGTTTGGTTTCGGTAG GTATTTGGCAGTAAATGCGGGAGTTAAGGATGGACTCCTTGTTCCAGAAGACGGGATTGAGAAGTTCATGAATGATTTGTTTGACCCACAAAATGTTTTT GCTTCCGTTAAAGGTCTGGCTCAGGTTGGCAGAATTGATAATGTGTTTGATCATGCAGTGTTGAAAAGTTCCTTGTCAGCTTTCTACAGAGCGAAAGGAG GAATCCAGTTGCCGGTTTATTACGAGGCACAGCCAATTCCAGGGCTTGAAGATGATGCACAGAAAGGGACGACTGATCTTGGCACTCATAATAATTTGGT GGAAGGTGGTACATTTCTAGGGCCGGTGGAAGAAGACTGGTTTTCTTCTTCGCCAAGAGGCTCTGAATTCAGCCGAGATTCACAGAACTCGTTGCAGAAA TCACATTTACACCGTAGGAGGAAGCGGAAGAGCATTGCTAAAATCATTAGTGGTAATCCTAATGCTGAGGATGATGAGCCTGCGATAAAAGATGGTGCAA CTAAAGTAGAAAAAAGTGCCGGCAAAACAGTATCTAGAAAGAAAAAGAGAAGCAGCCAAAGTGATCTTACAGGAGAAGAGGCAATTGGTGTTATTGGGAA ACCAGCTCCATCTGGAATTAGAAAGAGGAAAGGAAGAGACAAAGCTACCGATAAAGTCTTGGATTTGGCCGATGTGGAAGCAAGCTCCGGCAGACCTTCC GCTTCGTCTGTGATAACAAAGAGTAAAGCCAGCAACGATATTGCTTCCTTGGGTGTCAAAAAGCGTCAACGTGGAAATGAAGTTTCTTCCTCTGGGATAA GAACGAATGGCAGCAAAGATGCTGATACCAAAGGTTCAGGAACTAAGGGCGCTGCACAAGTTTCATCTAGATCGAAAAGGAGTATAGGTGGCGAGGTATC TGACACGAAAGGTATAGGTGATTCGGTTTCTAGGCGAAGGAAGAGAAAGAAAGATGGGGAAGTATCTGACTGCCCTCCAGTTACAGCAGATACTGGAATT TCTAATCCAGAAGGTGATGTCAGTGGCCTGAAGAAGAGAAGCATAACGAGCCCCTCGGTATGGAAAAGTTGGAAACCTATCACTGTCAAAAAAGATGCAA ACCAAGGGAATACAGAAGAAGCAGCAGAAGACACCATGGTATCCATGGAAGATAAAATGGATGATTCAAGTATTCCAAGTGATGACGCAAAGGGCAAAGG AACAAGTGACAGCCATCATCACGCAAAGGGCAAAGGAACAAGTGACAGCCTCACTTTGTCTAGGGAACGGAAGAAGAGCCGGTATTTGTCCCCTCCCTTC ACAAATCTTTCTATAGGACAAAAGACGACTAAGATGGTCGAAGCAAAAGGCGAGGCTGAAGCAGCTGCTAGTCATGGTAGTCATGATCATGATGGTGTGA ACTCTAAAGAATTCTCTAAAGAGCAAACTTCTGTGCAGGAGATGCATAATGATTTGGCTAATCAGACACCAAAAGGTTTCAACTTCACCACAGATGAAGC TGTGAAAGCTCGGGAAGCTGCTAGTGAAGTGTTGTGTAATATCCGGGCAGCCGCTTGCGATCCACTTCACGGTGGGGGAATCAATCACCTGGATGAATTT CTGGGTTTTGTTTCTGAATTGAGAAGTCCGGGGCCTGGCGATGGAACCAACCACGAGATGAATAGCAAGCCTCGGCGGGGAAGAAAGAAGAAGATTCCTC AAGAATCTGAATCCACCCCCGCTTCGGAGGTTAAATCCCAGAAGAACGAAGAAACAAAAAAGTCAGCCAAGGATGGGATCAAGCAGGGTGATGATGTTTC GGCGAATGAGAAGCAATCTCTCAGTAAGAAAGCTGTAGTTGCTGCTACCCTTTTGGTAACATTTGGGCCAGGATGTTACTTGCCTACCAAGAATGATCTA CTCAGAATATATGGACCATACGGTGCTCTAAACGAGGAAACTGATATGCTCTACAACAACCGCTGTGCCAGAGTTGCATTCTTGACAACATCTGAAGCAG AAGAAGCACTGAAGCACAGCCAGCAATCCAACCCTTTTGAAGCAACTCATGTGAACTTTCGGCTACGCTACCCGTCATCAGCAACTGGAACCGGAAGTAA CAGTGTGAAGAAGACTGCTGCTCCTGATTTGCATTCTTCCTTTGTGAATCGGTCGTTGCTGAATGAGATGGTGCTGAAGCTTGAGGCTGCGAGCACCATG CTTAAGAGTTTGGAGGAGGGTGTGTCAGTGGCGGACTTGAAATCGAGAGTGGAAGGTGAGATAAGAGGTGTGATTGAGAAGTTGACCGCAATGGTTGGGT CGGGGGATTGA
AA sequence Show only first row Show all	>Lus10014546 pacid=23170929 polypeptide=Lus10014546 locus=Lus10014546.g ID=Lus10014546.BGIv1.0 annot-version=v1.0 MNVIRTTIAGSSSLTGKEPKDPGGEGFRDATTTNNRVGNGVWVRPCDKAGFGADDVSATSKSLSEKGLGSGKIGPMVDGNGESLEDSEMNGVSSLLEMQQ SGRYPGLDSVLNVIDKSENSGYGNDGLDEKVKGGNKGKKDMECEGNSEDEMYENEFDVGDFIWGKIKSHPWWPGRVYDPLDASEYAKKVKHGEDKILVAY FGDETFAWCNPSQLKPFHENFVEMSNQSTSKNFVNAVEKALEEVGRSVDLRLTCPCVPRDNLFGFGRYLAVNAGVKDGLLVPEDGIEKFMNDLFDPQNVF ASVKGLAQVGRIDNVFDHAVLKSSLSAFYRAKGGIQLPVYYEAQPIPGLEDDAQKGTTDLGTHNNLVEGGTFLGPVEEDWFSSSPRGSEFSRDSQNSLQK SHLHRRRKRKSIAKIISGNPNAEDDEPAIKDGATKVEKSAGKTVSRKKKRSSQSDLTGEEAIGVIGKPAPSGIRKRKGRDKATDKVLDLADVEASSGRPS ASSVITKSKASNDIASLGVKKRQRGNEVSSSGIRTNGSKDADTKGSGTKGAAQVSSRSKRSIGGEVSDTKGIGDSVSRRRKRKKDGEVSDCPPVTADTGI SNPEGDVSGLKKRSITSPSVWKSWKPITVKKDANQGNTEEAAEDTMVSMEDKMDDSSIPSDDAKGKGTSDSHHHAKGKGTSDSLTLSRERKKSRYLSPPF TNLSIGQKTTKMVEAKGEAEAAASHGSHDHDGVNSKEFSKEQTSVQEMHNDLANQTPKGFNFTTDEAVKAREAASEVLCNIRAAACDPLHGGGINHLDEF LGFVSELRSPGPGDGTNHEMNSKPRRGRKKKIPQESESTPASEVKSQKNEETKKSAKDGIKQGDDVSANEKQSLSKKAVVAATLLVTFGPGCYLPTKNDL LRIYGPYGALNEETDMLYNNRCARVAFLTTSEAEEALKHSQQSNPFEATHVNFRLRYPSSATGTGSNSVKKTAAPDLHSSFVNRSLLNEMVLKLEAASTM LKSLEEGVSVADLKSRVEGEIRGVIEKLTAMVGSGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Lus10014546 [exp]	0	1
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10035214 [exp]	1.0	0.8963
AT3G18640	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10020889 [exp]	2.4	0.8710
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Lus10038425 [exp]	3.2	0.8904
AT3G48150		CDC23, APC8	anaphase-promoting complex sub...		Lus10004242 [exp]	5.9	0.8424
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	6.6	0.8701
AT5G20170			RNA polymerase II transcriptio...		Lus10043284 [exp]	10.0	0.8290
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	10.4	0.8353
AT5G25800			Polynucleotidyl transferase, r...		Lus10029748 [exp]	13.9	0.8391
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Lus10005669 [exp]	15.2	0.7551
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10022237 [exp]	15.2	0.7874

Compare expression of checked genes

Lus10014546 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.