Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 474 / 1e-153 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032140 [exp] 1436 / 0 AT3G27700 613 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032139 [exp] 1036 / 0 AT3G27700 588 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014548 [exp] 1031 / 0 AT3G27700 593 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G072100 [exp] 691 / 0 AT3G27700 607 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.001G351532 [exp] 654 / 0 AT3G27700 612 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014547 pacid=23170883 polypeptide=Lus10014547 locus=Lus10014547.g ID=Lus10014547.BGIv1.0 annot-version=v1.0 ATGGAACGCAGAGTTTCTGCCCTAAAGAGAATTGGTCTTTCTACTTCTGATTGTGTTAGTGACCCAGAGGAAAAGGAAATCAGTGATGAGGATGATGATG ACCGCAATCACAAGCATCGTAGGAAGGATGCACTTTCAGAGTCTATGGAGAGAGATTCCACTGATCCTGTTTCCACTAGGCCGTACAGGAAGAGAAATAG ACAGTTTGAAAATGGTAATTCTTCTAGGGAAAATGAATCTGAAGCTTACACCACAAAGTTTGAAAAGAGACGCCCTGGCCCAGGACATTTCTCCCAAAGG ATCAGAACGAACCAACCATTTTCGGGGGATCCTGGTGCTTTTCAGGGGAGAGGAAGGGACCCGGGTCCTTGGAGTCAACGTGATTCTAGATTCAACCAAG TCGATCCTGCTGCTGGTCTCTTTGCAGGGAGGGGGTTGCCCAATGTTTCAAACCCGCAAAGTGCATCCTGGAATGCTTTTGGATTGAATCCAGGAATTCC AAATGGCGGCTTGGATACACTTCATACCATGGGATTGCAAGGACCATTGGCACCGGCAGTAAACGTTTCATTGAATATTGGCATTAGGCGACAGCGTTGC AGAGATTTTGAGGAGCGTGGATTTTGTCTGAGAGGGGACATGTGTCCAATGGAGCATGGTGTTAATCGTATTGTTGTTGAAGATGTCCAGAGCCTTTCTC AGTTTAATCTCCCTGTTTCACTCCCAAATGCGCAACTGTTGGGAACTCCTGCTGTTCCAGGGGGCTTACTACCAATGGGTGCTTCCTCAGCCATGTTGAT GAGTCAAGCTGCAAATGCCAAAAGCAGCAAATCTGGACTCTACAGTGACAATAGTGAGCTTAATGGTGGATATCCTAGCTCTACTACCAATGGTGAAGCA GACTTCTATGATCCAGATCAACCTCTGTGGAATAACAATGTTCCTGAAACATCAAATACACTCTTACCCCTACATTCTTCCAATAATAATGGAAGTGGAT TTTTGATGAATGTTGATCCCTCTGATCGGACCCGTGCCAGGTTACATGACAGTACTGATATACATTCTGGTTCTGGCACAGGCTCATCTATTCGGGGCAG GGTTGGTAGTATGAGAAATAAATTAGATGGGAAAGAGAGAATAGATTCAACTGCTGGTAGCGTGAGGTATTTGGAGGATGAAGGTAAGGAGGATGAAGTG TCAGCGAGTCTTCGAGATTCGTTTCGTCAAGGAAAACATGTTACTAGCGGCGATACTGGCCCAACCACTGCCAAAGCTCAGGGTCAGCCCATGCGTTTTA TGCGAAATCGAAAGCTGTCTCAGAAGGCATTGCGTACATTATTTGTCAATGGTATTCCTCACATGAACAACAAAAGGGAGGCTCTTCTTTCTCATTTCCA AAAGTTTGGTGGGGTAATTGATATTTATATACCCTCCAATAGTGAACGGGCGTTTGTTCAGTTTTCGAAGACAGAAGCAGCAGAAGCTGCTCTACGGGCT CCTGATGCTGTCATGGGTAATCGATTTATCAAGTTGTTCTGGGCCAATCGTGATAGCATACCTGATGATGGCGTAAGCAGTAGTAGCGGTGTATCTTTAC CTCCAGGTGGTGTGGCATCAAACTCATGTCCATCACATCCTCCTGTTGCTAACAGGGGAAAAGATAGTAATCAGTACTGTGGTACAAAGGTTCCTATTGG TGCCTCTCACAGTGATTCTTCCATGTCTTCCAATGAGCACAAAAAGGCACCCACTGCAAATGGTCCCAAATGCCCTCCCCCTTTGCAGAAAAAGCTAGAG CAATTGAAGGAAGAGCTTCGCAAAAAGCAGGAGATGCTCGACCAGAAGAAGAATGACTTCCGGCGCCAATTGGACAAACTCCAGAAACAAGCAACAGTAA CCAAGAGTGAGGTAGTGAGTGAAACATTGAAGAGACCTAAAGTAGCCGGTGATGCCACCTCAACCCGTGGTGAGATGATGACTGATAAGAACAAATCAGC AGAAACTGTGTCATCCACTTCAAAGATGAATGCAGGGACAGCAACAGTGGAATCTTCAGGGTCAAAGTCATCAGGAAAGACACTATTACCTGATGCTCGC TCTCCTTATCCGGCAAATAGATACAAATTGGACAATCGACCTTCAACCTTCACAATAGTTCCCCCCTTGCCAGCTGGTTTAGAAAATGTTGCCACTTTAA AGGAGCACTTCTCCACTTTTGGTGATGTTACTTCCGTGGAGATGGAAGATGCTAAACCATGTGACAGTGACGAGAATACATTAAAGACGGCGAAACCATG TTCGGCTAGTGTGACTTTTGCAACACGCGGTTCAGCAGCGAAAGCATTTCTGAATGGTAAAAGCTGGCAGGACCACAATTTACAGTTTGTGTGGGTGGCA TCTAGTACATCCACCAACCAACCTGGGGGTAAAACAAACACATTAGCTGTTCCGACAGAGAAGGTAATAAACGTTGTTGATTCTGAGGATGCTTCTGCAT GTGGAAACGGGGGAACTCAGAACTCAAAAGCAGATAATGGTGTAGTAGAAGGAAAAAGCCAACTGCATGATGCTCATCAAGCCTATTCAACTGAAGAATC ACCCCATGCAAAGCCTGCAGCAATCGAGATTTCCTGTGATGAAGAGGCGATCAGATGGGAATCCGGTGAAGGTGACGACGGGTGCTGA
AA sequence Show only first row Show all	>Lus10014547 pacid=23170883 polypeptide=Lus10014547 locus=Lus10014547.g ID=Lus10014547.BGIv1.0 annot-version=v1.0 MERRVSALKRIGLSTSDCVSDPEEKEISDEDDDDRNHKHRRKDALSESMERDSTDPVSTRPYRKRNRQFENGNSSRENESEAYTTKFEKRRPGPGHFSQR IRTNQPFSGDPGAFQGRGRDPGPWSQRDSRFNQVDPAAGLFAGRGLPNVSNPQSASWNAFGLNPGIPNGGLDTLHTMGLQGPLAPAVNVSLNIGIRRQRC RDFEERGFCLRGDMCPMEHGVNRIVVEDVQSLSQFNLPVSLPNAQLLGTPAVPGGLLPMGASSAMLMSQAANAKSSKSGLYSDNSELNGGYPSSTTNGEA DFYDPDQPLWNNNVPETSNTLLPLHSSNNNGSGFLMNVDPSDRTRARLHDSTDIHSGSGTGSSIRGRVGSMRNKLDGKERIDSTAGSVRYLEDEGKEDEV SASLRDSFRQGKHVTSGDTGPTTAKAQGQPMRFMRNRKLSQKALRTLFVNGIPHMNNKREALLSHFQKFGGVIDIYIPSNSERAFVQFSKTEAAEAALRA PDAVMGNRFIKLFWANRDSIPDDGVSSSSGVSLPPGGVASNSCPSHPPVANRGKDSNQYCGTKVPIGASHSDSSMSSNEHKKAPTANGPKCPPPLQKKLE QLKEELRKKQEMLDQKKNDFRRQLDKLQKQATVTKSEVVSETLKRPKVAGDATSTRGEMMTDKNKSAETVSSTSKMNAGTATVESSGSKSSGKTLLPDAR SPYPANRYKLDNRPSTFTIVPPLPAGLENVATLKEHFSTFGDVTSVEMEDAKPCDSDENTLKTAKPCSASVTFATRGSAAKAFLNGKSWQDHNLQFVWVA SSTSTNQPGGKTNTLAVPTEKVINVVDSEDASACGNGGTQNSKADNGVVEGKSQLHDAHQAYSTEESPHAKPAAIEISCDEEAIRWESGEGDDGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014547 [exp]	0	1
AT5G44180	HD		Homeodomain-like transcription...		Lus10018634 [exp]	1.0	0.8979
AT4G26450		WIP1	unknown protein		Lus10008342 [exp]	3.9	0.8666
AT5G46210		CUL4, ATCUL4	cullin4 (.1)		Lus10038504 [exp]	4.6	0.8684
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	12.1	0.8644
AT5G20610			unknown protein		Lus10017162 [exp]	12.2	0.8390
AT5G22760			PHD finger family protein (.1)		Lus10020532 [exp]	14.7	0.8798
AT4G39420			unknown protein		Lus10006813 [exp]	15.5	0.8633
AT1G59750	ARF	ARF1	auxin response factor 1 (.1.2....		Lus10024455 [exp]	18.7	0.8180
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	18.9	0.8669
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10007760 [exp]	21.6	0.8293

Compare expression of checked genes

Lus10014547 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.