Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27700 490 / 2e-159 C3HZnF zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032139 [exp] 1563 / 0 AT3G27700 588 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10032140 [exp] 1151 / 0 AT3G27700 613 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Lus10014547 [exp] 1099 / 0 AT3G27700 623 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G351532 [exp] 761 / 0 AT3G27700 612 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.017G072100 [exp] 753 / 0 AT3G27700 607 / 0.0 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.1), zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein (.2) Potri.007G044400 [exp] 45 / 0.0002 AT4G36960 534 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.005G138600 [exp] 45 / 0.0002 AT4G36960 540 / 0.0 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014548 pacid=23170914 polypeptide=Lus10014548 locus=Lus10014548.g ID=Lus10014548.BGIv1.0 annot-version=v1.0 ATGGAACGCAGGGTTTCAGTACTGAAGAGAGTTGGTCTTTCAACTTCTGAATGTGCTGGTGACCCGGAGGAGAAGGAAGTCAGTGATGACGATGACGATG ACCGAAACCACAAGCATCGTAGGAAGGAGACACATTCAGGGTCCATGGAGAGAGATTCATCTGACCCTGTTTCCACTGGACCGTACAGGAAGAAAATTAG ACAATTTGAAAATGGCCATTCCTTCAGGGAAAATGATTCTGAAGATTACACTACAAAGTTTGAAAAGAGACGCCCTGGACCAGGACATTTCCCCCAAAGG GCCCGAATGAACCAGCCATTTTCTGGGAATTCTGGTCCCTTTCGCGGGAGAGGAAGGGACCCTGGTCCATGGAGTCAACATGATTCCAGATTCAACCAAG CCACTCATGCTGCTGGTCTCTTTCCAGGGAGGGGATTGCCCAATGTTTCAAATCTACAAAGTGCATCCTGGAATGCGTTTGGATTGAATCCAGCAATTGC TAATGGTGGCTTCGATACACTTCATACCATGGGATTGCAAGGTACATTGCCACCAGCAGTAAACGCTTCATTGAATATGGGTATCAGACGACAGCGTTGT AGGGATTTTGAGGAGCGTGGATTTTGTCTTAGAGGGGACATGTGTCCAATGGAGCATGGTGTTAATCGTATTGTTGTTGAAGATGTCCAGGGCCTTTCTC AGTTTAATCTCCCTGTTTCACTCCCTAATGCACAACTGGTGGGAAATCCTCCTGTTCCAGCGGGCTTGCAACCAATGGGTGCCCCTTCATCCATCTCGAT GAGTAAAGCTGTAAATGGAAACAGCAGCAAATCTGGACGGTACGATGACAGTATCGGATTGAATAATGGGTATCCTAGCTCAGCTACAGCAAGTGAAGCA GACTTTTATGATCCAGATCAACCCTTGTGGAATACCAATGATCCCGGAACATCAAATATATCCTTACATTCATCCAGAAATAATGAAAGTGAATCTGTGA TGGATATGGATCCCTCTGATTGGACCCGTTCTAGGTTACATGACAGTACTGATAATGCTGGGATGCATGCTGGTCCTGTCACAGGTTCATCTATTTGGGG CAGGGTTGGTAGTAGTACAAGAAATAGATTAGATGGAATAGATTCAACTGCAGGCACCATGGGTCGTTTGGAACATGAAGCAAAGGAGAACCAGGAAACG GCAGGCAATATTCGAGGTACGGTTCGTCAAGGAAAACATGTTTCTGCCGAGGATACTGGCCCAACCTCTGCCAAAGGTCACAGTGAGCCCATGCGTGTTA TGCGAAAGCCATCACAAAAGGCATTGCGTACATTATTTGTCAACAGTATTCCACACATGAACAACAAAAGAGAGGCTCTTCTTTCTCATTTCCAAAAGTT TGGTGAGGTAATTGATATTTATATACCCTCCAATAGTGAACGGGCATTTGTTCAGTTCTTGAAGACAGAAGCAGCAGAAGCTGCTCTTCGGGCTCCTGAT GCTGTAATGGGCAATCGATTTATCAAGTTGTTCTGGGCCAATCGTGATAGCGTACTTGATGATGGAGCAAGCAGTAGTAGTGCTGTATCTTTACCTCCTG GTGGTGTGGCATCAAAATCAGGTCCATCCCATCCTCCTGTTGCTAACAGGGGAAGAGATAGTAATCAGTACAGCGGAACAAAGGTTCCTGTTAGTGCCTC TCACACTGATTCTTCCATGTCTTTCAATGAGTACAAAAAGGTACCCAATACAAATGGTCCCAAATGCCCTCCCCCTTTGCAAAAAAAGCTAGAACAATTG AAGGAAGAGCTTCGGAAAAAACAGGAGATGCTTGACCAGAAAAAAAACGACTTCCGGCGCCAATTGGACAAACTTCAAAAACAAGCCACAGTAACAAAAA ATGAGGTAGTGAGTGAAACTATCAACAAACCAAAAGTAGCTGGCGATGCTGCCAACCTTGCTGGCCGTACCCTGTCTGATCCTCCCTCACCCCATGGTGA GACAAGGGTTGATAAGAATAGATCTGCTGAAACTGTGTCATCCACTACAAAGGCGAGTGCAGGGACAGCACCATTGGAATCTTCAGGGTTAAAGCCATCA GTAGAGGCAATAGTACCTGTTATTGGCTCTCCTTATCTGGCCAATAGATACAAGTTGGACAATCGCCCGACAACCTTCAGAATCATCCCTCCACTGCCAG CTGCTTTAGCTAATGTTGCCGTTTTGAAGGAGCACTTCTCTACTTTTGGTGATGTTACTTCCGTGGAAATAGAGGATACTGGACGGTGTAATAGTGATGG TAATGGTAATACTTCAGAGACGGCTAAGCTGTTCTCAGCAAATGTAACTTTTGCAACTCGCCGTTCAGCCGAGAAAGCATTTCTCAATGGTAAAACCTGG CAAGAGAACGATTTACAGTTTGTGTGGGTGGCATCTAGTACATTCATCAGTGAACCTAGGAGTAGAACAAAAACAGTAGCTGTTCCAGCTGAGAAGGTAA AAAATGTTGATTCTGAGGATGCTTCTGCATCTGGAAATGGAGAAACTCGGAAATCAGAAACAAATGACGGTGTAGAAGAGAAAAGGGAATTGCATGAAGC TTCTGAATGCTATTTAAATGACGAATCGCGGCAGGTAAAGCTTGCAGGAACTGAGATGGGTGAATCTGGTGAAGGTGATCATGGTTGCTGA
AA sequence Show only first row Show all	>Lus10014548 pacid=23170914 polypeptide=Lus10014548 locus=Lus10014548.g ID=Lus10014548.BGIv1.0 annot-version=v1.0 MERRVSVLKRVGLSTSECAGDPEEKEVSDDDDDDRNHKHRRKETHSGSMERDSSDPVSTGPYRKKIRQFENGHSFRENDSEDYTTKFEKRRPGPGHFPQR ARMNQPFSGNSGPFRGRGRDPGPWSQHDSRFNQATHAAGLFPGRGLPNVSNLQSASWNAFGLNPAIANGGFDTLHTMGLQGTLPPAVNASLNMGIRRQRC RDFEERGFCLRGDMCPMEHGVNRIVVEDVQGLSQFNLPVSLPNAQLVGNPPVPAGLQPMGAPSSISMSKAVNGNSSKSGRYDDSIGLNNGYPSSATASEA DFYDPDQPLWNTNDPGTSNISLHSSRNNESESVMDMDPSDWTRSRLHDSTDNAGMHAGPVTGSSIWGRVGSSTRNRLDGIDSTAGTMGRLEHEAKENQET AGNIRGTVRQGKHVSAEDTGPTSAKGHSEPMRVMRKPSQKALRTLFVNSIPHMNNKREALLSHFQKFGEVIDIYIPSNSERAFVQFLKTEAAEAALRAPD AVMGNRFIKLFWANRDSVLDDGASSSSAVSLPPGGVASKSGPSHPPVANRGRDSNQYSGTKVPVSASHTDSSMSFNEYKKVPNTNGPKCPPPLQKKLEQL KEELRKKQEMLDQKKNDFRRQLDKLQKQATVTKNEVVSETINKPKVAGDAANLAGRTLSDPPSPHGETRVDKNRSAETVSSTTKASAGTAPLESSGLKPS VEAIVPVIGSPYLANRYKLDNRPTTFRIIPPLPAALANVAVLKEHFSTFGDVTSVEIEDTGRCNSDGNGNTSETAKLFSANVTFATRRSAEKAFLNGKTW QENDLQFVWVASSTFISEPRSRTKTVAVPAEKVKNVDSEDASASGNGETRKSETNDGVEEKRELHEASECYLNDESRQVKLAGTEMGESGEGDHGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	0	1
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	2.0	0.9410
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	2.4	0.9471
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	2.4	0.9478
AT5G22760			PHD finger family protein (.1)		Lus10009383 [exp]	4.6	0.9468
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001744 [exp]	5.0	0.9397
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10037701 [exp]	5.2	0.9304
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	5.3	0.9099
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	5.5	0.9393
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10036515 [exp]	5.7	0.9165
AT4G39080		VHA-A3	vacuolar proton ATPase A3 (.1)		Lus10017490 [exp]	6.0	0.9164

Compare expression of checked genes

Lus10014548 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.