Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01560 182 / 8e-51 Protein of unknown function (DUF1421) (.1) AT5G14540 176 / 5e-48 Protein of unknown function (DUF1421) (.1) AT4G28300 70 / 2e-12 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032138 [exp] 439 / 1e-147 AT5G14540 204 / 4e-58 Protein of unknown function (DUF1421) (.1) Lus10042086 [exp] 73 / 3e-13 AT3G54170 381 / 3e-125 FKBP12 interacting protein 37 (.1) Lus10033692 [exp] 72 / 7e-13 AT4G28300 392 / 1e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10031645 [exp] 71 / 1e-12 AT4G28300 392 / 2e-132 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018089 [exp] 70 / 2e-12 AT5G14540 91 / 4e-19 Protein of unknown function (DUF1421) (.1) Lus10039827 [exp] 67 / 2e-11 AT4G28300 377 / 9e-126 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Lus10018593 [exp] 67 / 3e-11 AT4G28300 376 / 1e-125 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G348500 [exp] 207 / 3e-59 AT5G14540 185 / 1e-51 Protein of unknown function (DUF1421) (.1) Potri.T125008 [exp] 102 / 5e-23 AT5G14540 142 / 2e-36 Protein of unknown function (DUF1421) (.1) Potri.012G083200 [exp] 99 / 1e-21 AT5G14540 147 / 3e-38 Protein of unknown function (DUF1421) (.1) Potri.019G095400 [exp] 68 / 1e-11 AT4G28300 261 / 5e-81 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2) Potri.013G131600 [exp] 64 / 2e-10 AT4G28300 284 / 1e-89 Protein of unknown function (DUF1421) (.1), Protein of unknown function (DUF1421) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [flax] [poplar] UBA PF07223 [flax] [poplar] DUF1421 UBA-like domain (DUF1421)
Representative CDS sequence Show only first row Show all	>Lus10014549 pacid=23170953 polypeptide=Lus10014549 locus=Lus10014549.g ID=Lus10014549.BGIv1.0 annot-version=v1.0 ATGGATATTAAGCCGTCATTCATCCAGACGATGAATACGTCGCAGTTAGTTGACAAGCAGATAATGGATTTGACCTCATCATCCTCCCCTTCCTCCGTCT CCCAACCGCAAGCCTCATCTCCCAAGTCCAATTCCACCGGCGGCGCTGGTAAGGACTTCATCAATTTTATGAATCACCCCAAGGACAATGACGATCAGCA CGCCGATTACGGTTCCGGAACCGGTGAGAATGGAATTCGGAAGGAGGAGATCCTTCCTAGCTACGATTTCCACCTGATTCGTCCCGCTGTTGGCGGAGAC TCCACCGCTGGTGCTAGGTCTTGGAATTCCGCCGACGGCAAGTCCACCTCTGTCACGATGAGCGGTTCTCCTGTCAGACATTATGGTTCCCTTGACTCAA TTGAACCATCCAAAGATATTTTGGAGAAGGACCAAAGCGTTTCTGATTCAGCAATACTATCTGAGATTGACAAAACTATGAAGAGACATACAGATAATAT GTTGATCGTTCTAGAAGGTGTTAGTTCCCGACTAATACAGTTGGAGAGTAGAACCCGTCACCTCGAGAGTTCTGTGGATGATTTGAAGGTTTCTGTTGGG AACAATCATGGAAGTGCTGATGGGAAAATGAGACAGCTGGAGAATATCCTCCGAGAGGTTCAAACCGGAGTGCAGTCTGTGAAGGATAAGCAAGAACTTC TGGAGTCACAATTGCAACTTTCGAAGCTTCAGGTCACTAAGGCAGACCAGCAGCAACCTGCAGCGGCACAGAACACTGCTTCTGCTTCTGGTCCGCCGCA GGCTCACCAACAGCAGCAGCATGTTCCTGTGAATTTTCCGCAATCAATACCTTCGGTACCGGTACAGGTTCCTCATCCTACCGTCCCTTCCTCACAGCAG CAGAGTTATCAACCAATAACTTCACATCCCAACCAATTTGCACCGGCTGCTCCTTCCCCTCCTTCCATCTCGCAGCGAGATCCATACTATACTCCTGCTG CTGCTGCTGCTCAAACTCAAGAGCCTCCAAACCCACAGTACCAGGTCCCGCCATCACAGCAGCCACAAGTACAACCTTCTCCAGCAGCTCCTCCGCATCA ACTGTATCAACCTATTCCTCAGTCGCCATATACTCAGCAAACCCAGATACCACAACCTCCACCACAGTCTCAACTGCAACAACTTTCAGCTAGTCACCAC TCCGAGGAACCATCTTATCTCACCTCCCAAAGTTATCAGCCAAGCCTACGCCATCCAACTTCTCAACCTCCACCAAATGGGCCCCACTCTCCCCGACTGT ATTATGGTCCTTCCTCCCCATTCGAGCCACCATCATCCATCAGGCCTAGTTCAGGATTATCTACTGGATACAATCCTCAGTCTGGAGCAGCCTTGGAACT TTATCCGTATGGAGGACCAGCTTCTCAATACAGCGGCAGCAGCTCAACGATGAAACCTCCGCAACAACTCCAGTCTGGTTCTATGTCCCATAGCGGCGGA TCTGGGTACCCTCAACTTCCAACTGCTCGTATGCTACCTCAGGCATCGCCGGCCGGAAGGCCGGCAGCTGGTGGTGGCGGGGGGTCGGGTTCTTCTTCTG CAAACAGGGTTCCTGTTGATGATGTGATCGACAAGGTGGCAACCATGGGATTCCCAAGAGATCAAGTCCATGAAGCAGTCCGGAAACTTACCGAGAATGG GCAGTCAGTTGACTTGAACGTGGTTCTGGATAAGCTGATGAACGGTGGAGGCTACTACGGACGATAG
AA sequence Show only first row Show all	>Lus10014549 pacid=23170953 polypeptide=Lus10014549 locus=Lus10014549.g ID=Lus10014549.BGIv1.0 annot-version=v1.0 MDIKPSFIQTMNTSQLVDKQIMDLTSSSSPSSVSQPQASSPKSNSTGGAGKDFINFMNHPKDNDDQHADYGSGTGENGIRKEEILPSYDFHLIRPAVGGD STAGARSWNSADGKSTSVTMSGSPVRHYGSLDSIEPSKDILEKDQSVSDSAILSEIDKTMKRHTDNMLIVLEGVSSRLIQLESRTRHLESSVDDLKVSVG NNHGSADGKMRQLENILREVQTGVQSVKDKQELLESQLQLSKLQVTKADQQQPAAAQNTASASGPPQAHQQQQHVPVNFPQSIPSVPVQVPHPTVPSSQQ QSYQPITSHPNQFAPAAPSPPSISQRDPYYTPAAAAAQTQEPPNPQYQVPPSQQPQVQPSPAAPPHQLYQPIPQSPYTQQTQIPQPPPQSQLQQLSASHH SEEPSYLTSQSYQPSLRHPTSQPPPNGPHSPRLYYGPSSPFEPPSSIRPSSGLSTGYNPQSGAALELYPYGGPASQYSGSSSTMKPPQQLQSGSMSHSGG SGYPQLPTARMLPQASPAGRPAAGGGGGSGSSSANRVPVDDVIDKVATMGFPRDQVHEAVRKLTENGQSVDLNVVLDKLMNGGGYYGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14540			Protein of unknown function (D...		Lus10014549 [exp]	0	1
AT3G02360			6-phosphogluconate dehydrogena...		Lus10034102 [exp]	3.3	0.8618
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	4.2	0.8162
AT4G28300			Protein of unknown function (D...		Lus10033692 [exp]	4.6	0.8254
AT1G72300			Leucine-rich receptor-like pro...		Lus10016395 [exp]	10.7	0.8417
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Lus10009440 [exp]	20.8	0.8166
AT1G79180	MYB	ATMYB63	myb domain protein 63 (.1)		Lus10031758 [exp]	32.8	0.8240
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10012454 [exp]	35.7	0.8196
AT4G27270			Quinone reductase family prote...		Lus10018401 [exp]	38.5	0.8200
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10039404 [exp]	45.1	0.8065
AT3G43190		ATSUS4, SUS4	ARABIDOPSIS THALIANA SUCROSE S...		Lus10020506 [exp]	45.3	0.8105

Compare expression of checked genes

Lus10014549 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.