Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15380 556 / 0 DRM1 domains rearranged methylase 1 (.1) AT5G14620 555 / 0 DMT7, DRM2 domains rearranged methyltransferase 2 (.1) AT3G17310 252 / 1e-74 DRM3, AtDRM3 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032136 [exp] 1073 / 0 AT5G14620 580 / 0.0 domains rearranged methyltransferase 2 (.1) Lus10032652 [exp] 279 / 2e-84 AT3G17310 479 / 5e-160 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10043099 [exp] 46 / 7e-05 AT3G17310 148 / 9e-39 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347000 [exp] 662 / 0 AT5G15380 619 / 0.0 domains rearranged methylase 1 (.1) Potri.010G152200 [exp] 282 / 1e-85 AT3G17310 528 / 3e-179 domains rearranged methyltransferase 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00145 [flax] [poplar] DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence Show only first row Show all	>Lus10014552 pacid=23170967 polypeptide=Lus10014552 locus=Lus10014552.g ID=Lus10014552.BGIv1.0 annot-version=v1.0 ATGTCGCAAGACGGTGATGATTTTACATGGGACAGTGATATTGATCGGCAGATTGACGAGTACGGTGAAACTGCCACCAGTTCAACGCTAATTGATAGGG CAGGACAGGCTGTCCCTTTGGTAGGTTCATCCGGGACAAAAGTGATTGATCAGTTCATTGAAATGGGCTTCTCGGAAAAAGAAGTTGCTGAAGCAATTCG AGAGACAGGAGAGGAGAATGCTGATAATGCTGATTTGATACTTTCAACTCTTCTCACGCTCGGGGTCAGTTTATTTTTGCTCTTGATCAATGCATTTTCA GATTTTCTACTGCTCCTAACATTTGTTTATACTATTGTTCCTGCGGCCATTCAAAATGATGTTCCTGGACAACCGGATGTTGGTTCTGATCGTCTTTCAG ACTTTGATGAAAGTTTTTTTGATGAGTTTTCAGATATAGATGATGCTGGGAGCGAGGTAAATGTAAAAGTTGAGGCTGATGATGATGACATGTTAGCTTC CCTTGTATCTATGGGATACACAACAACTGAAGTAGCAATAGCTATGGAGAGATGTGGACCAGATGCTACAGCTGCAGAGCTTACAGATTTCATTTCTGCT GCTCAGATGGCAAAGGAAGCAGATGCTTTGTACCCAGTAGAGGAGAGAAAGCCAAGACCACTGGTTACTGAACTCAACAGGAGGAATTCAAACGGTGGCG TGCCGGCAAAGAAAAGGCCGAGGATGGACGGGGTGGAAGACGATGACATCATTCGACTTCCGGTTCCGATGATCGGGTTCGGTACCCCGACAAGTTATCA AGTAACATCTAGGCGGCTTCCCGAAGCAGCCATCGGATCGCCCTACTTCTACTATGAGAACGTGGCACTAGCACCCAAAGGAGTGTGGCAGGTAATATCT CGGTTCTTGTATGAGGTTGAGCCGGAGTTTGTCGACTCCAAGTATTTCTGTGCTGCTGCAAGGAAAAGAGGGTATGTCCACAATCTGCCTATTGAAGGAA GATACCCACTTCTGCCACTTCCTGCACAAACCATCCACGAAGCTTTGCCCATGACAAAGAAGTTTTGGCCCAAATGGGATACCCGGGACAAGCTCAACTG CTTACAAACTGCAATGGCGAGTGCAAAGTTGACGGAGAGGATCCGTAAGGCCGTGGAGATATATGATGACGATTCACCTCCACCCTCGGATGTTCAGAAG TATGTGATGCATGAGTGTAAGAAGTGGAACTTGGTCTGGGTAGGAAAGAACAAAGTAGCACCGCTGGAACCGGACGAAGTCGAGATGCTTTTGGGGTTCC CAAAGAACCACACTAGAGGAGGAGGAATCAGCAGGACTGATAGATACAAATCTCTCGGCAACTCGTTTCAGGTGGACACAGTTGCCTATCACTTGTCGGT GCTGAAGGCCAAGTTCCCAAACGGCATGAACGTGCTGTCCCTCTTCTCTGGAATCGGCGGAGCCGAAGTAGCGTTGTACAAGCTCGGGATTCGCATGAAG AATGTTGTTTCAGTGGAGATCTCGAAGGTGAACAGAGATATGCTGAAGTCTTGGTGGGACCAAACCAACCAGAGAGGAAACTTGATTGAGATACCCGACG TTCAACAAGTAACAGGTGAGAAACTGGAGGAGCTGATGTCACTAGTTGGCGGGTTCGATCTAGTAATAGGTGGTAGCCCGTGCAACAACTTGGCTGGTAG CAACCGACATCACCGAACTGGCCTCGAAGGGGAGCATTCATCCCTGTTTTTTGACTACCATAGGATTCTGGAGGTGGTAAGAGGTTCGGCTGGTAGGTAT AGGCAGTAG
AA sequence Show only first row Show all	>Lus10014552 pacid=23170967 polypeptide=Lus10014552 locus=Lus10014552.g ID=Lus10014552.BGIv1.0 annot-version=v1.0 MSQDGDDFTWDSDIDRQIDEYGETATSSTLIDRAGQAVPLVGSSGTKVIDQFIEMGFSEKEVAEAIRETGEENADNADLILSTLLTLGVSLFLLLINAFS DFLLLLTFVYTIVPAAIQNDVPGQPDVGSDRLSDFDESFFDEFSDIDDAGSEVNVKVEADDDDMLASLVSMGYTTTEVAIAMERCGPDATAAELTDFISA AQMAKEADALYPVEERKPRPLVTELNRRNSNGGVPAKKRPRMDGVEDDDIIRLPVPMIGFGTPTSYQVTSRRLPEAAIGSPYFYYENVALAPKGVWQVIS RFLYEVEPEFVDSKYFCAAARKRGYVHNLPIEGRYPLLPLPAQTIHEALPMTKKFWPKWDTRDKLNCLQTAMASAKLTERIRKAVEIYDDDSPPPSDVQK YVMHECKKWNLVWVGKNKVAPLEPDEVEMLLGFPKNHTRGGGISRTDRYKSLGNSFQVDTVAYHLSVLKAKFPNGMNVLSLFSGIGGAEVALYKLGIRMK NVVSVEISKVNRDMLKSWWDQTNQRGNLIEIPDVQQVTGEKLEELMSLVGGFDLVIGGSPCNNLAGSNRHHRTGLEGEHSSLFFDYHRILEVVRGSAGRY RQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10014552 [exp]	0	1
AT2G14520			CBS domain-containing protein ...		Lus10030665 [exp]	1.4	0.8682
AT3G11640			unknown protein		Lus10021290 [exp]	3.9	0.8270
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	5.1	0.8595
AT3G53900		UPP, PYRR	PYRIMIDINE R, uracil phosphori...		Lus10024350 [exp]	6.2	0.8540
AT3G54190			Transducin/WD40 repeat-like su...		Lus10003237 [exp]	6.9	0.8418
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	9.2	0.8523
AT3G19540			Protein of unknown function (D...		Lus10018707 [exp]	9.5	0.8511
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	11.2	0.8140
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	11.8	0.8432
AT1G23380	HD	KNAT6S, KNAT6L,...	KNOTTED1-like homeobox gene 6 ...		Lus10013037 [exp]	12.4	0.8361

Compare expression of checked genes

Lus10014552 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.