Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14610 770 / 0 DEAD box RNA helicase family protein (.1.2) AT3G01540 743 / 0 ATDRH1, DRH1 ARABIDOPSIS THALIANA DEAD BOX RNA HELICASE 1, DEAD box RNA helicase 1 (.1.2.3.4) AT3G06480 596 / 0 DEAD box RNA helicase family protein (.1) AT1G55150 424 / 1e-140 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 422 / 9e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G31970 310 / 3e-96 STRS1 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) AT3G58510 311 / 1e-95 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2), DEA(D/H)-box RNA helicase family protein (.3) AT1G20920 308 / 1e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G42520 302 / 3e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G58570 298 / 1e-90 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032133 [exp] 958 / 0 AT5G14610 850 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10032135 [exp] 946 / 0 AT5G14610 849 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10001272 [exp] 607 / 0 AT5G14610 665 / 0.0 DEAD box RNA helicase family protein (.1.2) Lus10009474 [exp] 598 / 0 AT3G06480 744 / 0.0 DEAD box RNA helicase family protein (.1) Lus10037646 [exp] 432 / 2e-143 AT1G55150 843 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10015627 [exp] 431 / 4e-143 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10019484 [exp] 416 / 5e-136 AT5G63120 757 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10043334 [exp] 413 / 1e-134 AT5G63120 752 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000849 [exp] 305 / 6e-94 AT2G42520 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347100 [exp] 810 / 0 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.017G071400 [exp] 804 / 0 AT5G14610 792 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.010G152400 [exp] 593 / 0 AT3G06480 801 / 0.0 DEAD box RNA helicase family protein (.1) Potri.003G038300 [exp] 430 / 5e-143 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.015G083000 [exp] 424 / 3e-139 AT5G63120 707 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G084600 [exp] 412 / 3e-134 AT5G63120 704 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.003G098800 [exp] 299 / 6e-92 AT1G31970 726 / 0.0 STRESS RESPONSE SUPPRESSOR 1, DEA(D/H)-box RNA helicase family protein (.1) Potri.005G257400 [exp] 311 / 2e-91 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G007900 [exp] 300 / 2e-91 AT2G42520 807 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G194600 [exp] 302 / 1e-90 AT2G47330 1048 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0680 [flax] [poplar] WW PF00397 [flax] [poplar] WW WW domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10014553 pacid=23170908 polypeptide=Lus10014553 locus=Lus10014553.g ID=Lus10014553.BGIv1.0 annot-version=v1.0 ATGGATTCGCTCGAAAGTTTGTCGCCGCTCAATCTCACTCAGCAGAAACGCGACAAACAGATTCCAGCTGGCATCTCAAAACGGAAGGTTCAAGTGGAGC AGCCCGCTCGTCATGCCTACAGTCCTGTCAAAGAAGATGGTAGGTATGGGAGAAGTAGCAATGCTGAATCAACAAAAACTGACTCCGAAGCAAGGAGTAG CCAGGGAGGTGATGTGCCACCACCACTCATGTCTTTTCAAGACACCGGATTTCCTTCTGAGCTGCTGAGAGAGGGTCAACGAATTGCCTCAGTTAATATG GCTGCTGCCGCTGCTCCAAGATTTGCACCAGAAGATCCTACTCTTCCCAAGCCATGGAGAGGCTTGGTTGATGGAAAAACTGGTTACCTTTACTTTTGGA ACCCAGAAACCAACATCACTCAATATGAGAGGCCTACTGCGCTGTCTCTGCCATCCAAGTCATCTACCGTGCCTATCAACTCCTTAGTTCAAGTGGAGCA ACCTGCTCGTCGTGCCTACAGTCCTGTCAAAGAAGATGATAGGTATGGGAGAAGTAGCAATGGTGGATCAACAAAAACTGATACTGAAACAAGGAGTATC CAGGATGAACGAAGTGCGGTTGCTCAAAGTGTCCAAAATGGAACAATTGGTGTAGCTGGGGTAGTTGCGGCTAGAGGACTTGCATCTTCTGCTGGAGGAA GCTGTTTATCAATTGATGCTTACAGGCGCCGGCATGAAATAACTGTAACTGGGGGTGATGTGCCACCACCACTGATGTCTTTTCAAGACACTGGATTTCC TTCTGAGCTACTGAGAGAGGTGCGATATTTACTCCTGGTGGAGCTAATGTCGTACGCTGTGTTGCCCTTCCTTTGGGAGGGGGCTTGTAATTTGGAGTGC CCTATTTTGCTGGACCATGTATACAGTGCTGGTTTCACTGCTCCAACCCCAATTCAGGCTCAGTCATGGGCTGTTGTTCTGCAGAGTAGAGATATTGTGG CCGTTGCCAAAACAGGCTCTGGGAAAACCTTAGGTTACTTGATCCCTGCCTTTCTTCATCTTAAGCGTCTTCGTAATGACCCTAGAATGGGTCCAACTGT GCTGGTATTGTCGCCTACAAGAGAATTGGCTACGCAGATTAAAGATGAAGCTTTGAAGTTTGGCAAGTCGTCAAGAATTACATGCACGTGTTTATATGGA GGAGCACCAAAGGGTCCTCAACTGGGCCAGCTAGATAGAGGGACTGACATTGTTGTTGCAACTCCTGGTCGTTTAAATGATATTCTCGAGATGAGAAGAG TAAGCCTCGGGCAGATATCATACCTTGTTCTTGACGAGGCTGATAGAATGCTGGATATGGGTTTTGAGCCGCAGATAAGGAAGATTGTGAAGGAGGTGCC TACTCGTCGGCAAACCCTCATGTATACGGCAACTTGGCCAAAGGAGGTCCGGAAAATTGCTGCTGATCTTCTGGTCAATCCTGTTCAAGTTAATATTGGA AATGTTGATGAGCTTGTGGCTAACAAGTCTATCACCCAGTATGTTGAGGTCGTTTCACCTATGGAGAAACACAAACGGCTGGAACAGATACTTCGCTCTC AAGAACCAGGATCAAAGGTTCTAATCTTCTGTTCAACCAAAAAAATGTGCGACATTCTTGCTCGTAACCTCAGCCGGTTTGGAGCTGCTGCTATTCATGG AGACAAGTCACAGAGTGAGAGGGATCAAGTTTTGAGTCAGTTTCGGTCTGGTAGGGCTCCTCTGCTGGTAGCTACTGATGTTGCCGCCCGTGGTTTGGAT GTAAAGGACATAAGGGTCGTAGTCAACTACGACTTTCCTAATGGTGTGGAGGATTACGTTCATAGGATTGGCAGAACTGGAAGAGCCGGTGCCACTGGTG TAGCTTATACATTCTTCGGAGAGCAGGATGCCAAACATGCTACAGAGCTCGTTAAACTCTTAGAGGGTGCAAGCCAGAAGGTTCCCCCTGAAATTCGCGA CATGGCTTCTCGAGGTGGCGGAATGGGTAGAAGTAGACGATGGGGTAATGGCGACAGAGGAGGTCGTGGTGGTTTCGGTTCCAGTGGTGGCAGTTACGGT TCGAATGGCGGCGGCAGTTTTGGTTCCAGTGGCGGCGGGAGGGGCGGCAGTTGGGGTGGTAGCCGTGGCTATGGCCAGGACAGCAATGATAGGTATGATA GGGGTGGTGCTAGTGATGGATATGGTGGCGGCGGTGGGTCTAGCTGGAGCGATCATTTCAAAAGTGAGAAGCGTCATCGCAGCCGCAGCCCTGGGCCAGC GCGAGGTGGAGGAGGTTCCCCTCCTCGCAGTTTTCACCGGGCAATGATTGATCGTAGGTGA
AA sequence Show only first row Show all	>Lus10014553 pacid=23170908 polypeptide=Lus10014553 locus=Lus10014553.g ID=Lus10014553.BGIv1.0 annot-version=v1.0 MDSLESLSPLNLTQQKRDKQIPAGISKRKVQVEQPARHAYSPVKEDGRYGRSSNAESTKTDSEARSSQGGDVPPPLMSFQDTGFPSELLREGQRIASVNM AAAAAPRFAPEDPTLPKPWRGLVDGKTGYLYFWNPETNITQYERPTALSLPSKSSTVPINSLVQVEQPARRAYSPVKEDDRYGRSSNGGSTKTDTETRSI QDERSAVAQSVQNGTIGVAGVVAARGLASSAGGSCLSIDAYRRRHEITVTGGDVPPPLMSFQDTGFPSELLREVRYLLLVELMSYAVLPFLWEGACNLEC PILLDHVYSAGFTAPTPIQAQSWAVVLQSRDIVAVAKTGSGKTLGYLIPAFLHLKRLRNDPRMGPTVLVLSPTRELATQIKDEALKFGKSSRITCTCLYG GAPKGPQLGQLDRGTDIVVATPGRLNDILEMRRVSLGQISYLVLDEADRMLDMGFEPQIRKIVKEVPTRRQTLMYTATWPKEVRKIAADLLVNPVQVNIG NVDELVANKSITQYVEVVSPMEKHKRLEQILRSQEPGSKVLIFCSTKKMCDILARNLSRFGAAAIHGDKSQSERDQVLSQFRSGRAPLLVATDVAARGLD VKDIRVVVNYDFPNGVEDYVHRIGRTGRAGATGVAYTFFGEQDAKHATELVKLLEGASQKVPPEIRDMASRGGGMGRSRRWGNGDRGGRGGFGSSGGSYG SNGGGSFGSSGGGRGGSWGGSRGYGQDSNDRYDRGGASDGYGGGGGSSWSDHFKSEKRHRSRSPGPARGGGGSPPRSFHRAMIDRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14610			DEAD box RNA helicase family p...		Lus10014553 [exp]	0	1
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	3.5	0.9247
AT1G73380			unknown protein		Lus10031316 [exp]	3.9	0.9174
AT1G80620			S15/NS1, RNA-binding protein (...		Lus10009249 [exp]	4.7	0.9213
AT4G14300			RNA-binding (RRM/RBD/RNP motif...		Lus10023740 [exp]	4.7	0.8995
AT5G16260		ELF9	EARLY FLOWERING 9, RNA binding...		Lus10026858 [exp]	4.9	0.8886
AT4G04790			Tetratricopeptide repeat (TPR)...		Lus10043070 [exp]	5.3	0.9191
AT1G73380			unknown protein		Lus10031887 [exp]	9.6	0.8735
AT3G44370			Membrane insertion protein, Ox...		Lus10026414 [exp]	10.0	0.8717
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Lus10012434 [exp]	11.2	0.8929
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	11.4	0.9204

Compare expression of checked genes

Lus10014553 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.