Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14600 459 / 4e-164 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032132 [exp] 596 / 0 AT5G14600 478 / 2e-171 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10032134 [exp] 282 / 8e-96 AT5G14600 211 / 4e-68 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G120500 [exp] 466 / 4e-166 AT5G14600 434 / 1e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08704 [flax] [poplar] GCD14 tRNA methyltransferase complex GCD14 subunit
Representative CDS sequence Show only first row Show all	>Lus10014554 pacid=23170924 polypeptide=Lus10014554 locus=Lus10014554.g ID=Lus10014554.BGIv1.0 annot-version=v1.0 ATGTTGCTTGTTGATCCCGAAAAGAAGTTGTCTTTCACGCGGTGCATTAGAGATGGAGATCTGGTCATTGTGTACGAGAAGCACGATGCAATGAAGGCGG TTAAAGTGAGTGAGAGCTCAGTGCTGCAGAACCGTTTCGGCATGTTTAAACATTCGGATTGGATTGGGAAGCCCTTTGGGGCAAAGGTGTTCAGCAACAA GGGAGGATTTGTTCATTTACTAGCTCCGACACCTGAACTGTGGACATTAGTGTTGAGCCACCGAACGCAGATCCTCTATATAGCTGATATCTCCCTTGTT GTCATGTACTTGGAGATAGTTCCTGGATGTTTAGTGCTCGAGTCCGGAACGGGAAGTGGATCTTTGACAACTTCGCTTGCTAGGGCTGTAGCTCCAACTG GACAAGTGTACACATTTGATTTCCATGAACAAAGAGCTGCCTCGGCTAGGGAAGATTTTGAGAAGACAGGAATCAGCAGCTTAGTGACAGTTGGAGTAAG GGACATTCAGGGTCAAGGGTTCCCAGAAGAACATGCGGGATTAGCCGATGCGGTGTTTCTGGATCTACCGCAACCATGGCTAGCTATTCCTTCAGCCGAG AAAATGCTGAAACAAGATGCTGTATTGTGCTCGTTCTCGCCATGCATTGAACAAGTACAACGCAGTTGCGAAACCCTTAGGTCAAACTTTACTGATATAA GGACATTTGAGATATTGGTGAGGACGTATGAAGTTCGAGAAGGCAAACTGGAGAGCTTCCAAGGAGGAGATGGTAACATGTCGATGGGCAGTCGTCCGGG GAAGAGGAAGCAGCCTTCGAGTGAAAGAGCCGGTTCGCAAGACGATAGCAGTACTCCTCCTCTTCCAGTTCTGGCCAAGCCCTGTTCTGAGACTAGAGGC CATACTGGCTATCTCACATTTGCTAGACTCCAATGTTCGGCTTGA
AA sequence Show only first row Show all	>Lus10014554 pacid=23170924 polypeptide=Lus10014554 locus=Lus10014554.g ID=Lus10014554.BGIv1.0 annot-version=v1.0 MLLVDPEKKLSFTRCIRDGDLVIVYEKHDAMKAVKVSESSVLQNRFGMFKHSDWIGKPFGAKVFSNKGGFVHLLAPTPELWTLVLSHRTQILYIADISLV VMYLEIVPGCLVLESGTGSGSLTTSLARAVAPTGQVYTFDFHEQRAASAREDFEKTGISSLVTVGVRDIQGQGFPEEHAGLADAVFLDLPQPWLAIPSAE KMLKQDAVLCSFSPCIEQVQRSCETLRSNFTDIRTFEILVRTYEVREGKLESFQGGDGNMSMGSRPGKRKQPSSERAGSQDDSSTPPLPVLAKPCSETRG HTGYLTFARLQCSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	0	1
AT1G15420			unknown protein		Lus10030351 [exp]	4.7	0.8786
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	7.7	0.8306
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10006314 [exp]	8.1	0.8782
AT3G57000			nucleolar essential protein-re...		Lus10032054 [exp]	11.8	0.8460
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	12.7	0.8344
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Lus10031974 [exp]	14.5	0.8324
AT3G09500			Ribosomal L29 family protein ...		Lus10003306 [exp]	14.7	0.8551
AT1G36240			Ribosomal protein L7Ae/L30e/S1...		Lus10019681 [exp]	14.9	0.8601
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	18.0	0.8499
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	18.4	0.8259

Compare expression of checked genes

Lus10014554 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.