Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08740 615 / 0 NDC1 NAD(P)H dehydrogenase C1 (.1) AT3G44190 55 / 9e-08 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT5G22140 52 / 5e-07 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) AT2G29990 48 / 2e-05 NDA2 alternative NAD(P)H dehydrogenase 2 (.1) AT1G07180 45 / 0.0002 NDA1, ATNDI1 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032131 [exp] 753 / 0 AT5G08740 610 / 0.0 NAD(P)H dehydrogenase C1 (.1) Lus10040657 [exp] 63 / 3e-10 AT1G07180 750 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10013339 [exp] 58 / 8e-09 AT3G44190 497 / 6e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10036185 [exp] 57 / 2e-08 AT1G07180 742 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10001856 [exp] 57 / 2e-08 AT3G44190 506 / 1e-180 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10020091 [exp] 56 / 8e-08 AT1G07180 674 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10038322 [exp] 55 / 1e-07 AT1G07180 746 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10006731 [exp] 54 / 3e-07 AT1G07180 679 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Lus10039769 [exp] 49 / 1e-05 AT4G28220 770 / 0.0 NAD(P)H dehydrogenase B1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098700 [exp] 652 / 0 AT5G08740 710 / 0.0 NAD(P)H dehydrogenase C1 (.1) Potri.001G217800 [exp] 56 / 5e-08 AT3G44190 536 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.011G044600 [exp] 54 / 3e-07 AT1G07180 681 / 0.0 ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD \( P \) H DEHYDROGENASE, alternative NAD(P)H dehydrogenase 1 (.1) Potri.004G036300 [exp] 53 / 4e-07 AT2G29990 678 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1) Potri.009G047100 [exp] 50 / 4e-06 AT2G29990 757 / 0.0 alternative NAD(P)H dehydrogenase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF07992 [flax] [poplar] Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10014555 pacid=23170881 polypeptide=Lus10014555 locus=Lus10014555.g ID=Lus10014555.BGIv1.0 annot-version=v1.0 ATGGCTCAATGCGCCGGTATCCGGAGCTCTTCCTCGTCGTTCACGCGCTCTCTATCTTTCTCCACCAGCGAACGCTTCCGTGTTCGACCTTCCTCTAATC CTCGTTGCCTTGACGGTTCGAATTCCGCGGCTAGTCGTATAACCGTTCATTGCTTGTCTACTTCTTCAGGCATGTCAAGGGGAAAATTGTTCCCATTTTC CTCGGCTCAAACTCCATTTAGGACCTTCCATTCTAGCTTCACGAGTTCCCATGTTCGATTTGTAACTTCGGAGGCAGTCGGGACTGATGCAGCAGCTGCT CCCAATCCACCTGTAGAAGAGAAGCCTCCACGGGTCTACACTTGGCCTTACAATGAGAATCCGAGGGTGTGCATACTAGGTGGTGGATTTGGAGGCTTAT ATACTGCTTTGAGACTAGAATCGCTTGTATGGCCAGATGATAAGAAACCTCAGGCTGATGTTATGATGGCATTGTGGGTCTGGGCTCAGTGGTATTGTCT TGGATCAGGATTGGGTTTCACTCGGCAGTCGACTGAAAATTCTAGTATCAATGCAGAAGTGGATTCTTGGGAAATTGCTCCACGCTTTGCGGACTTGCTT TCAAACTCTGCTGTGCAGTTTGTACAAGACAGGGTAAAAGTTCTGCAGCCCTGTGATCACTTGAGAAATGATGGGTCAGGAAAAGTTAAGTCTGCCGGTA CAGTGCTTCTACAAAGTGGACTTCTGATAGAGTACGACTGGCTGGTTCTTGCTCTGGGATCTGAAGCTAAACTTGATGTTGTGCCAGGATCGGCAGAGTT TGCATTGCCATTTTCTACTCTGGAAGATGCTCTAAAAGTGGATCATAAGTTGAGAGAACTGGAGAGAAGGAACTTTGCTAAGAAAGCTCCAATAAGTGTA TGTATTGTTGGCTGTGGTTATGCTGGAGTGGAATTAGCTGCCACGGTTTCTGAGAGACTGCAGGACAGGGGGGTTGTACGTGCTATTAATGTGGAGAATA TGATCTGCCCAACTGCACCACCTGGCAACAGGGAAGCTGCACTTAAGGTTCTTTCTTCCAGGAAAGTTGAGTTGCTGTTGGGTTACTTCGTCCGCTCTGT ACGGAGAGTGACGGACTCAGATTATGAGAAATATAGTTTGGAACTCCAACCTGCTGAGAGGGGAACACAAGGTCAAATTATCGAAACTGATTTGGTTTTA TGGACTGTGGGGTCTAAGCCCCTGCTTCCTGAGTTGGAACCCAATGAACAGCCGCAAGAACTCCCACTAAATGCTCGGGGACAAGCCGAGACAGATGAGA CCCTCCGTGTCAAGGGTCATCCACGGATATTCGCTCTTGGCGACTCGTCTTCTCTGAGGGATTTGAAAGGGAAGCTTCTTCCGCCAACTGCTCAGGTTGC ATTTCAGCAAGCGGATTTTACTGGTTGGAACATTTGGGCTGCCATTAATGACCGTCCATTACTGCCATTTAGGTTCCAAAATCTCGGCGAAATGATGACG CTGGGGCAGAACGATGCTGCTGTATCGCCAAGTTTCATCGATGGACTAACCTTAGAAGGTCCTGTCGGCCATGCTGCCAGGAAAATCGCATACCTGATTC GGCTGCCAACGGATGAGCATAGGGTGAAAGTAGGGCTGAGTTGGCTGGCCAAGTCTGCTGTCCAGTCAATTGCATCAGTTCAGAGCACCCTTGCCAATAT CGTTTCAGGATGA
AA sequence Show only first row Show all	>Lus10014555 pacid=23170881 polypeptide=Lus10014555 locus=Lus10014555.g ID=Lus10014555.BGIv1.0 annot-version=v1.0 MAQCAGIRSSSSSFTRSLSFSTSERFRVRPSSNPRCLDGSNSAASRITVHCLSTSSGMSRGKLFPFSSAQTPFRTFHSSFTSSHVRFVTSEAVGTDAAAA PNPPVEEKPPRVYTWPYNENPRVCILGGGFGGLYTALRLESLVWPDDKKPQADVMMALWVWAQWYCLGSGLGFTRQSTENSSINAEVDSWEIAPRFADLL SNSAVQFVQDRVKVLQPCDHLRNDGSGKVKSAGTVLLQSGLLIEYDWLVLALGSEAKLDVVPGSAEFALPFSTLEDALKVDHKLRELERRNFAKKAPISV CIVGCGYAGVELAATVSERLQDRGVVRAINVENMICPTAPPGNREAALKVLSSRKVELLLGYFVRSVRRVTDSDYEKYSLELQPAERGTQGQIIETDLVL WTVGSKPLLPELEPNEQPQELPLNARGQAETDETLRVKGHPRIFALGDSSSLRDLKGKLLPPTAQVAFQQADFTGWNIWAAINDRPLLPFRFQNLGEMMT LGQNDAAVSPSFIDGLTLEGPVGHAARKIAYLIRLPTDEHRVKVGLSWLAKSAVQSIASVQSTLANIVSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	0	1
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	1.7	0.8885
AT3G58830			haloacid dehalogenase (HAD) su...		Lus10020774 [exp]	2.4	0.8773
AT4G30950		FADC, SFD4, FAD...	STEAROYL DESATURASE DEFICIENCY...		Lus10036613 [exp]	3.2	0.8894
AT1G03310		ATISA2, ISA2, D...	BRANCHING ENZYME 2, ARABIDOPSI...		Lus10000661 [exp]	4.2	0.8414
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Lus10023891 [exp]	6.2	0.8916
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Lus10012905 [exp]	8.2	0.8779
AT4G37380			Tetratricopeptide repeat (TPR)...		Lus10024971 [exp]	10.4	0.8761
AT3G61780		EMB1703	embryo defective 1703 (.1)		Lus10004004 [exp]	12.6	0.8487
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10020002 [exp]	13.2	0.8770
AT2G21340			MATE efflux family protein (.1...		Lus10018080 [exp]	14.3	0.8094

Compare expression of checked genes

Lus10014555 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.