Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62960 296 / 7e-99 unknown protein AT3G27770 290 / 6e-97 unknown protein AT1G10660 277 / 8e-92 unknown protein AT2G47115 189 / 1e-57 unknown protein AT1G70505 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032130 [exp] 633 / 0 AT5G62960 303 / 2e-101 unknown protein Lus10042109 [exp] 281 / 5e-93 AT5G62960 397 / 1e-138 unknown protein Lus10027692 [exp] 270 / 5e-89 AT5G62960 355 / 2e-122 unknown protein Lus10029133 [exp] 260 / 5e-84 AT1G10660 338 / 5e-115 unknown protein Lus10002386 [exp] 224 / 2e-71 AT5G62960 320 / 5e-109 unknown protein Lus10038056 [exp] 222 / 1e-70 AT1G10660 252 / 1e-82 unknown protein Lus10009991 [exp] 220 / 9e-70 AT1G10660 246 / 3e-80 unknown protein Lus10039964 [exp] 199 / 2e-59 AT5G62960 247 / 7e-78 unknown protein Lus10030594 [exp] 181 / 7e-55 AT1G70505 261 / 6e-86 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G347400 [exp] 362 / 6e-125 AT3G27770 314 / 9e-107 unknown protein Potri.010G042600 [exp] 302 / 2e-101 AT1G10660 372 / 1e-129 unknown protein Potri.015G078200 [exp] 300 / 1e-100 AT5G62960 382 / 8e-133 unknown protein Potri.012G082400 [exp] 283 / 4e-94 AT5G62960 387 / 1e-134 unknown protein Potri.002G190200 [exp] 230 / 3e-73 AT2G47115 344 / 1e-118 unknown protein Potri.014G115200 [exp] 225 / 4e-71 AT2G47115 340 / 4e-117 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014556 pacid=23170927 polypeptide=Lus10014556 locus=Lus10014556.g ID=Lus10014556.BGIv1.0 annot-version=v1.0 ATGATTCAGCTCCTGCAGCTACTGAGTGGTGACGATGATACAACCAGATTGAGCTATTGGCTCAACTGGAGGGTGTTGCTATGTGCCACTTGGGTTTTGG TACCCATGGTTGTGGCAGTGTTTGTTATCCGCAAGTACGAAGGTCTGGATCATTTGGGAGGATCCTCCGGTGGCAAAATTCAGCAAGGGAAAACGTCCTT ATCGTACAGTGACGCTGTGTGGAAGCCTTGTTTTAAGCAAATCCATCCCGTTTGGCTGTTAGTTTATCGAGTTCTGGCCTTTTGTGTGCTTTTCGCTACT CTGGTTCTGAAGTTGAACTCCAATGGAGCTCGAATGTATTTCTATTATACTCAGTGGACTTATACTCTGGTTACTATCTATTTTGCGCTTGGATCCCTGC TCTCGGTTTATGGATGTTACCGGTTTCACAAGTTGCACCGTCAAAGATCTGGTCTCAATCATGAAATAAGAGATTCCGAGCAAGGGTTTAATGCTCCTCT AATAACTGATGAAACTGCAGATGGTCATGAGATCAGAAAAAGACCAGTTGATGGAGAAGTTTATGTTCAGGAAGTTCCTACTATGTATTACATATTTCAG ACCATATACCAGATTTGTGCTGGATCAGTTATGTACACCGATTGCATTTACTGGTTCATTATATTTCCATTTCTGAACATTCAAGATTACACTCTCAACT TTATTACAGTAGACATGCATTCAGTCAATGCCATCCTGCTCATTGGCGACATGGCTATGAATAGCTTGCCGTTCCCTTGGTTCCGGATATCTTACTTCAT TCTGTGGACTGGTACTTTTGCCCTTTTCCAATGGGCTGTTCATGCCTGTGAAAACATTTGGTGGCCATACCCATTCTTTGATTTAGCATCGCCGTATGCT CCTTTGTGGTATCTGCTGATGGCATCACTGTCGGTAACATGCTATGGGATATACGTGTTGATAGCGAAGGTGAAGCATCAAGCCTTCTCAAAATGCTTCC CGGAATCTTATCACTGTTTGACATAG
AA sequence Show only first row Show all	>Lus10014556 pacid=23170927 polypeptide=Lus10014556 locus=Lus10014556.g ID=Lus10014556.BGIv1.0 annot-version=v1.0 MIQLLQLLSGDDDTTRLSYWLNWRVLLCATWVLVPMVVAVFVIRKYEGLDHLGGSSGGKIQQGKTSLSYSDAVWKPCFKQIHPVWLLVYRVLAFCVLFAT LVLKLNSNGARMYFYYTQWTYTLVTIYFALGSLLSVYGCYRFHKLHRQRSGLNHEIRDSEQGFNAPLITDETADGHEIRKRPVDGEVYVQEVPTMYYIFQ TIYQICAGSVMYTDCIYWFIIFPFLNIQDYTLNFITVDMHSVNAILLIGDMAMNSLPFPWFRISYFILWTGTFALFQWAVHACENIWWPYPFFDLASPYA PLWYLLMASLSVTCYGIYVLIAKVKHQAFSKCFPESYHCLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62960			unknown protein		Lus10014556 [exp]	0	1
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022215 [exp]	1.4	0.8288
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10011259 [exp]	2.0	0.7942
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	4.9	0.7872
AT3G23940			dehydratase family (.1.2)		Lus10032616 [exp]	5.7	0.7792
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Lus10038323 [exp]	7.1	0.7788
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	7.3	0.7972
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10009147 [exp]	10.1	0.7580
AT5G43630		TZP	zinc knuckle (CCHC-type) famil...		Lus10022216 [exp]	10.6	0.7694
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	11.0	0.7542
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	15.3	0.7955

Compare expression of checked genes

Lus10014556 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.