Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14530 552 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G66240 325 / 1e-110 Transducin/WD40 repeat-like superfamily protein (.1.2.3) AT4G02730 76 / 4e-15 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 72 / 6e-14 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G50230 71 / 3e-13 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 58 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 57 / 4e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 57 / 7e-09 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G27640 57 / 9e-09 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 57 / 9e-09 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021575 [exp] 342 / 3e-117 AT5G66240 540 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10017157 [exp] 343 / 5e-116 AT5G66240 541 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10032128 [exp] 302 / 3e-103 AT5G14530 260 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 84 / 4e-18 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 83 / 1e-17 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 72 / 7e-14 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 62 / 1e-10 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 59 / 2e-09 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10018081 [exp] 59 / 2e-09 AT5G50230 766 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345900 [exp] 626 / 0 AT5G14530 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.017G071900 [exp] 605 / 0 AT5G14530 558 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G114600 [exp] 337 / 1e-115 AT5G66240 556 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2.3) Potri.002G051900 [exp] 85 / 2e-18 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 78 / 3e-16 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 67 / 3e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G087200 [exp] 67 / 4e-12 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 58 / 4e-09 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G470900 [exp] 56 / 9e-09 AT5G56130 586 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 56 / 1e-08 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014558 pacid=23170940 polypeptide=Lus10014558 locus=Lus10014558.g ID=Lus10014558.BGIv1.0 annot-version=v1.0 ATGGCAACGGCGTCGCTTTCGGAGCTCGATGAAGACACTGTGCGGAGCATGGCGGTCGGAGCTCTATTCACCGACTTCGGTGGAAAGATAAACTCTGTCG ATTTCCATCGTAAAGACGATTTGCTTGTCACTGCTAGCGAGGATGATTCCGTTCGGCTCTACGACATTGCTAGCGCCAAGCTGCTAAAGACTACATTTCA CAAGAAACATGGAGCAGACCGCATTTGCTTTACTCACCATCCCAGCTCTGTAATTTGTTCCTCCAAGTACAATTTGGAGACGACTGGAGAGTCCTTAAGG TATCTATCCATGTATGACAACAGATGCCTTCGCTATTTCAAAGGACACAATGACAGGGTGGTTTCCCTCTGCATGTCTCCGATCAATGATAGCTTCATGT CTGGTTCTCTTGATCACAGTGTTAGAATATGGGATCTTCGTGTGAATGCCTGCCAGGGGATCTTACGACTACGAGGCCGCCCAACAGTTGCGTATGATCA ACAAGGGCTAGTCTTTGCTGTGGCAATGGAAGGGGGTGCTATCAAATTGTTTGACTCGCGTTCTTACGATAAGGGGCCTTTCGACACATTTTTAGTTGGG GGAGACACTGCCGAGGTCTGCGATATCAAATTCAGCAACGACGGGAAATCAATGCTACTGACAACAACCACTAACAGCGTTTATGTGCTTGATGCATATG CTGGGGAGAAGCGTTGTGGGTTCAGCCTGGAACCATCTCCAAACACAACCATCGAAGCAACTTTTACCCCGGATGGACAGTATGTGGTATCAGGATCGGG AGATGGAACGCTGCGTGCTTGGAACATCAACAATGCCAACGAGGTGGCGTGCTGGAACAGCCATATAGGAGTTCCAAGTTGCTTGAAATGGGCTCCTCGC CGGGTAATGCTCGTCGCCGCATCATCCGTTCTCACATTCTGGATTCCTGATTCTTCTAAATCATCACCGGCGGACAACCATTCCCAGCAATAG
AA sequence Show only first row Show all	>Lus10014558 pacid=23170940 polypeptide=Lus10014558 locus=Lus10014558.g ID=Lus10014558.BGIv1.0 annot-version=v1.0 MATASLSELDEDTVRSMAVGALFTDFGGKINSVDFHRKDDLLVTASEDDSVRLYDIASAKLLKTTFHKKHGADRICFTHHPSSVICSSKYNLETTGESLR YLSMYDNRCLRYFKGHNDRVVSLCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIKLFDSRSYDKGPFDTFLVG GDTAEVCDIKFSNDGKSMLLTTTTNSVYVLDAYAGEKRCGFSLEPSPNTTIEATFTPDGQYVVSGSGDGTLRAWNINNANEVACWNSHIGVPSCLKWAPR RVMLVAASSVLTFWIPDSSKSSPADNHSQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G14530			Transducin/WD40 repeat-like su...		Lus10014558 [exp]	0	1
AT3G15010			RNA-binding (RRM/RBD/RNP motif...		Lus10023817 [exp]	2.8	0.9310
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	4.5	0.9126
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	4.6	0.9068
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	5.2	0.9202
AT5G42820	C3HZnF	ATU2AF35B	Zinc finger C-x8-C-x5-C-x3-H t...		Lus10003375 [exp]	5.5	0.9281
AT3G02920		ATRPA32B	Replication protein A, subunit...		Lus10019976 [exp]	5.7	0.8758
AT2G15430		NRPE3A, NRPD3, ...	DNA-directed RNA polymerase fa...		Lus10002823 [exp]	8.8	0.9093
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	11.2	0.8877
AT2G32980			unknown protein		Lus10030015 [exp]	15.7	0.8682
AT2G27730			copper ion binding (.1)		Lus10020624 [exp]	15.8	0.8934

Compare expression of checked genes

Lus10014558 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.