Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27640 536 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 89 / 6e-19 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 81 / 2e-16 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G43920 75 / 5e-14 transducin family protein / WD-40 repeat family protein (.1) AT1G10580 67 / 2e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT4G29830 66 / 2e-11 VIP3 vernalization independence 3, Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 64 / 4e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 66 / 5e-11 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G08560 64 / 2e-10 transducin family protein / WD-40 repeat family protein (.1.2) AT5G53500 64 / 2e-10 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032126 [exp] 915 / 0 AT3G27640 584 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10012230 [exp] 86 / 4e-18 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10002860 [exp] 83 / 4e-17 AT2G43770 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10022847 [exp] 79 / 2e-15 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10006916 [exp] 76 / 1e-14 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 75 / 2e-14 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10011916 [exp] 76 / 4e-14 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 72 / 2e-13 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 71 / 3e-13 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345400 [exp] 599 / 0 AT3G27640 525 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 91 / 7e-20 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 74 / 4e-14 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002700 [exp] 74 / 7e-14 AT5G08560 616 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 72 / 3e-13 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.015G087200 [exp] 72 / 6e-13 AT5G50230 801 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 69 / 2e-12 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.004G153700 [exp] 69 / 2e-12 AT4G34460 624 / 0.0 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) Potri.008G172800 [exp] 69 / 4e-12 AT1G10580 874 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 68 / 4e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10014560 pacid=23170911 polypeptide=Lus10014560 locus=Lus10014560.g ID=Lus10014560.BGIv1.0 annot-version=v1.0 ATGGCGGTAGCGCCAACTCTAGCTTCCCAAAAACATTTCCCACAGACTAAAACCCCTGTTTTCCATTATGCTTCCCCAACACAACTCCGTAATCCCGTAC AGTCCTTCTCCCGCACTCTTCACTTCCTCCGCCATCACTGCTCCACTCCAATGGAGGCTTCCAGCTCCACCTCAACGCACAAGTCCGGATCCTTCTTCCA AGATCTCAGGTCAAGGGAACTCAACGGATTCAGAGTTCGGAAGCGGCCGTATTCCCAGGATTCGCTGCTGCAATTCGACGTGGTCGGAGAGGTAGCAGTT GAGCATAACAACGAGGATACGCCTCCTTTGGCCGTTTCTTTCTGCAAGACGGCTAAAAATGCTCACATTCTCGCGGTGTCTGATGAGGACGGCTACGTGA GCTTGTTCGATACACGGCGGAAGCTGTCCTCTTCTTCTACTCGTCAAGAGAATGCAGAAAAATCGAGAATTATTGAGTGGGTAGCTCATCAGAATGCCAT ATTTGATGTTCAATGGATTAAGGATGACACCAACATTCTCACAGCTTCAGGAGATCAAACTATACAACTGTGGGATGTAGAACGCAGGAAATGCAAAGGC GTCTTAACGGGGCATGCTGGAAGTGTTAAATCTCTCTGCTCCCATCCGTCAAATTCTGACCTTCTTGTCTCTGGTTCAAGAGATGGTTCGTTTGCTTTGT GGGACTTGAGGTGCCAGAACACTTCCACAAGAAGAACTAGTGAAACTTGTATAAGTTCAACTGCTATGGTAAAGGGAGCTCATCTTTCAGCCCAAGCAAA ACGGACTAGGCGTGGCAAGGCAGCTTCCATGAGCATCACATCAGTTCTTTATCTTAAAGATGAGATGTCCATTGCGACTGCTGGTGCAGTAGACAGCATT ATCAAATTCTGGGATACGCGGAATCTGAAAACTCAAGTTACTCAAGTGTGCCCTCAACCCAAGTCGTCAACGGAAAAGGTGAAGACATTGCATGGTATAT CTAGTCTATCTCAGGACTCCTATGGAACGTTCCTTACAGCTTCATGCATGGATAATAGAATTTACTTGTATAATGTTCTTCAGCTTGAAAACGGTCCCAT ACAGTCATTCACTGGATGCCGCATAGAGTCATTCTTTGTAAAGTCAGCAATTAGTCCCGATGCTTCGTGCATACTCAGTGGGTCTAGCGATGGAAACGCC TACCTATGGCAGGTGGGGAAGCCCCAGATGGATCCTACCATATTGAAAGGCCATGATGGAGAAGTAACAGCAGTAGATTGGTGTCAGTCTGAAGAAGGAA AGATATCAACTTCTGCAGACGATTTCACGGTTCGTGTATGGAACGCTCAAAACTACTATGGTTCAAGCACAAGATCACCAACTTCGATCCGGAGGAGAGT AATGGCGATCCCAGATGAGGAACAGAGACGGCTGAACTTGAATCTTGTAAGAAGTGAAGCCGATGGTGATGATTCAGTTTTGTCAGAGAAAGAAGCAATG CCAGCAGCAGCACCTGGAACTCCTGAAACTCAAAGGAAAGTTTGGGGGGAGGTGTTTGTAGAGACAACCCCTGAATCAGCAACGAAGAGCCCTTCTTCTG TGTTGAATCCTCCCTCTTCCTTGAAAAGAAAAACCATTCGTGACTACTTCATTACTGCATAA
AA sequence Show only first row Show all	>Lus10014560 pacid=23170911 polypeptide=Lus10014560 locus=Lus10014560.g ID=Lus10014560.BGIv1.0 annot-version=v1.0 MAVAPTLASQKHFPQTKTPVFHYASPTQLRNPVQSFSRTLHFLRHHCSTPMEASSSTSTHKSGSFFQDLRSRELNGFRVRKRPYSQDSLLQFDVVGEVAV EHNNEDTPPLAVSFCKTAKNAHILAVSDEDGYVSLFDTRRKLSSSSTRQENAEKSRIIEWVAHQNAIFDVQWIKDDTNILTASGDQTIQLWDVERRKCKG VLTGHAGSVKSLCSHPSNSDLLVSGSRDGSFALWDLRCQNTSTRRTSETCISSTAMVKGAHLSAQAKRTRRGKAASMSITSVLYLKDEMSIATAGAVDSI IKFWDTRNLKTQVTQVCPQPKSSTEKVKTLHGISSLSQDSYGTFLTASCMDNRIYLYNVLQLENGPIQSFTGCRIESFFVKSAISPDASCILSGSSDGNA YLWQVGKPQMDPTILKGHDGEVTAVDWCQSEEGKISTSADDFTVRVWNAQNYYGSSTRSPTSIRRRVMAIPDEEQRRLNLNLVRSEADGDDSVLSEKEAM PAAAPGTPETQRKVWGEVFVETTPESATKSPSSVLNPPSSLKRKTIRDYFITA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27640			Transducin/WD40 repeat-like su...		Lus10014560 [exp]	0	1
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Lus10022895 [exp]	1.7	0.9611
AT5G22110		DPB2, CYL2, DBP...	CYCLOPS 2, DNA polymerase epsi...		Lus10042296 [exp]	3.5	0.9373
AT5G65360			Histone superfamily protein (....		Lus10012744 [exp]	4.6	0.9360
AT1G18090			5'-3' exonuclease family prote...		Lus10027250 [exp]	5.0	0.9314
AT5G52800			DNA primases (.1.2.3)		Lus10038837 [exp]	7.7	0.9236
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Lus10013481 [exp]	8.5	0.9289
AT3G59550		ATSYN3, SYN3, A...	SISTER CHROMATID COHESION 1 PR...		Lus10037478 [exp]	9.8	0.9306
AT1G79890			RAD3-like DNA-binding helicase...		Lus10037548 [exp]	10.4	0.9269
AT4G18425			Protein of unknown function (D...		Lus10013975 [exp]	10.8	0.9061
AT3G17030			Nucleic acid-binding proteins ...		Lus10037764 [exp]	12.0	0.9236

Compare expression of checked genes

Lus10014560 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.