Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19130 760 / 0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032125 [exp] 1350 / 0 AT5G19130 793 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G345200 [exp] 960 / 0 AT5G19130 791 / 0.0 GPI transamidase component family protein / Gaa1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04114 [flax] [poplar] Gaa1 Gaa1-like, GPI transamidase component
Representative CDS sequence Show only first row Show all	>Lus10014561 pacid=23170915 polypeptide=Lus10014561 locus=Lus10014561.g ID=Lus10014561.BGIv1.0 annot-version=v1.0 ATGGCAGACACGGAGAAGGAGGTTGCAGCTGTGACTCATGAATGGAAGCCGAAGCCAAGACCGATTGTCCGCCTTGGGATCTTCCTTATCTCGCACAGCC ACCTCGTTAGTGTTGTTTGCTGTACGGCTGGAGTTCTAGCGCTCTTTCTGCTGCCCATGCTTGCCAAGACCACTTACATTTCCGAAAATGCGCTCATGCC AGGTTCGGCGAGTAGTATGCTGTCTAATCATGACATTTCGGAAGCGAATCAATTGGTTATGGATTTAACTGGTTTAGATTCAGCTGCTGTGGATGCAGGC ATAGGAAGGAGAAGAGTACTTGCAAAATACTTATCAGACTTGGGAGTTGAAGTCGGTTATCATAAGTTCCAATCTCATCAGAATCAGTTACATCCTCTGC ACTTCTTCTCCAGCCCTGATTCTGGGTTATTGCAAGAGAATGGTAGCTGTTCGTCTTATGGCATGAATGTTGTCGGAATTGTAAGGGCGCCACAGGGCGA TGGTAAAGAGGCTATTGTGTTGGTGACTCCATACAATTTCAGAAAGAGCGATTCAACTGAAGCTTTATCTGTTAGCATTGCATATGCAGTGTTTTCGTTG CTCAGTCGAGTTACGTGGCTGGCCAAGGATATTATTTGGCTCGTTGCAGATTCACAGTATGGAGAATATGCCCCTGTTGCTTCTTGGCTTAGGGACTACC ACATACCCGCGTTTTCTAGTTTAGCTGCTCAGAATGCTGGTTCATGTTCTAACACAAGTAGTCTTAATGTAGTAAATGAAGAATCTCTTGGTCTAACAGG GATATCTGTTGGGTTTAGACGTGCTGGGACTATGGCCGCTGCTCTGGTCATAAAAGTCACCGAGGGAAAATATCAGTTTGAAGACACTCTCGGTGTCTAT GCTGAGGCTTCCAATGGGCAGATGCCAAATCTAGATCTTATCAATATTGTGAATTATTTAGCTGTACACAGACAAGGGTTGCGTGTGAAAGTTCAGAAAT TCCTGTCTCTTCTTGAATGGAAATTACTTCGGGTGTTGGGAGATACTTTTAACGTCATTGGAAATGTTGCTGGAAGCTTAAATCAAGAATGGAAATTTGG TATTCCTACGACAGATTACATTGAGGGCGCAGCAACGCTTGCAAGTTCATTATATCACCAGGCACTCGGTATTCCAACAGGTCCACATGGAGCTTTCCGT GACTTTCAGGTTGATGCCATTACTTTGGAGATTTCACCCAAAGTAGTCTATACAAATAAGGGCAGACGTAAGGAATTTATTCTGCGAGGTGCAAGGTTGA TTGAAGGGGTTGTGCGTTCAGTTAACAATCTTCTTGAGAAGTTCCATCAATCATTCTTCCTCTACCTCTTAACGGCGCCGGCTAAATTTGTCTCGGTTGG AGTATACATGATTGCTTTCGCTCTCCTCGTGGCACCACTTCCCCTAGTTGCCGCTTCCCTGTATGTCGACTCTAATAAGCTGGAACCTAGTCCCCAAGAA GCCACAGACAACCAAACTGGTTCTTCTCCGGACAAGCTCTTGATCAACTTCAGACCATGGAAATGGCTCAAAGCAGCCAAAGAAGTATTCGCGGTCCACG CATGGGGTGTAGCTGTTGCACTGCTCCCTTATTTCATCTGCAAAATACCCGATTGCAGTCCAGCAGCCAGCTCCATCATCTGGTTCTCAATCTCAACAGT TGGACTCCTGATCTTATATCTCATCATCGGTTCTCCTCCGAAACCCGAATGGGAAATCTTGAAATCGGTGACGATCTCGGCTGCTTTCATCGGTTTGCTT CTCATGTCTGTTGTCAATTTCGCAACGGCAGAAATCGGGGCGTTACTGCTAGTTCCAGCTTGTTTGTTGGCCCGACCTTTAACATTGGACATGAGAAACT CAAGTTTAAGGAGTTTCCTGAGGATGTCCTGCAATGTGGTGTTCAGTCTTGTATCGTTTCCGCCTGCTGCATTTTTCATCTTGAAAGCTGTTATTATGGA TGAAGCTTTCAACAGCATGGAGGTGGGAGACTTTTGGGAGTGGGTGGAATCTCTTTGGGCATGGAACAGTGCTACCTACATCTACTTAGGTATGGTACAC CTCCCGTGTTGCCTATTATGCTTGCGCATTTCGCTACACTCTTCTTGA
AA sequence Show only first row Show all	>Lus10014561 pacid=23170915 polypeptide=Lus10014561 locus=Lus10014561.g ID=Lus10014561.BGIv1.0 annot-version=v1.0 MADTEKEVAAVTHEWKPKPRPIVRLGIFLISHSHLVSVVCCTAGVLALFLLPMLAKTTYISENALMPGSASSMLSNHDISEANQLVMDLTGLDSAAVDAG IGRRRVLAKYLSDLGVEVGYHKFQSHQNQLHPLHFFSSPDSGLLQENGSCSSYGMNVVGIVRAPQGDGKEAIVLVTPYNFRKSDSTEALSVSIAYAVFSL LSRVTWLAKDIIWLVADSQYGEYAPVASWLRDYHIPAFSSLAAQNAGSCSNTSSLNVVNEESLGLTGISVGFRRAGTMAAALVIKVTEGKYQFEDTLGVY AEASNGQMPNLDLINIVNYLAVHRQGLRVKVQKFLSLLEWKLLRVLGDTFNVIGNVAGSLNQEWKFGIPTTDYIEGAATLASSLYHQALGIPTGPHGAFR DFQVDAITLEISPKVVYTNKGRRKEFILRGARLIEGVVRSVNNLLEKFHQSFFLYLLTAPAKFVSVGVYMIAFALLVAPLPLVAASLYVDSNKLEPSPQE ATDNQTGSSPDKLLINFRPWKWLKAAKEVFAVHAWGVAVALLPYFICKIPDCSPAASSIIWFSISTVGLLILYLIIGSPPKPEWEILKSVTISAAFIGLL LMSVVNFATAEIGALLLVPACLLARPLTLDMRNSSLRSFLRMSCNVVFSLVSFPPAAFFILKAVIMDEAFNSMEVGDFWEWVESLWAWNSATYIYLGMVH LPCCLLCLRISLHSS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19130			GPI transamidase component fam...		Lus10014561 [exp]	0	1
AT3G03570			Protein of unknown function (D...		Lus10020328 [exp]	3.5	0.8684
AT3G55700			UDP-Glycosyltransferase superf...		Lus10004671 [exp]	4.9	0.8663
AT3G26370			O-fucosyltransferase family pr...		Lus10006227 [exp]	5.5	0.8772
AT1G43690			ubiquitin interaction motif-co...		Lus10024546 [exp]	7.9	0.8697
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Lus10011020 [exp]	8.7	0.8368
AT1G14020			O-fucosyltransferase family pr...		Lus10026624 [exp]	8.9	0.8744
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	10.2	0.8651
AT3G18060			transducin family protein / WD...		Lus10038960 [exp]	10.8	0.8507
AT1G31780			unknown protein		Lus10037280 [exp]	11.5	0.8534
AT2G14835			RING/U-box superfamily protein...		Lus10002131 [exp]	14.8	0.8608

Compare expression of checked genes

Lus10014561 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.