Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40490 291 / 4e-95 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 271 / 4e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G17640 193 / 1e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G26650 168 / 2e-47 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 164 / 3e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G55550 161 / 5e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 156 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 153 / 2e-41 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 148 / 5e-40 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT1G58470 125 / 2e-32 XF41, ATRBP1 RNA-binding protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032124 [exp] 430 / 2e-149 AT5G40490 307 / 3e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043154 [exp] 265 / 1e-85 AT3G13224 361 / 5e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032595 [exp] 262 / 2e-84 AT3G13224 357 / 2e-122 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10043124 [exp] 167 / 4e-47 AT2G33410 334 / 2e-111 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10039054 [exp] 163 / 1e-45 AT3G07810 428 / 4e-147 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 162 / 1e-44 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032624 [exp] 160 / 1e-44 AT2G33410 335 / 2e-112 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 160 / 7e-44 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10039053 [exp] 159 / 7e-44 AT3G07810 417 / 1e-142 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G344900 [exp] 323 / 2e-108 AT5G40490 286 / 1e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G370300 [exp] 285 / 2e-93 AT3G13224 317 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.017G064901 [exp] 224 / 4e-72 AT3G13224 216 / 1e-71 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G196500 [exp] 209 / 3e-63 AT1G17640 274 / 4e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G040900 [exp] 206 / 6e-62 AT1G17640 272 / 3e-88 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G170400 [exp] 169 / 6e-48 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 168 / 2e-47 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 167 / 2e-47 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G195300 [exp] 166 / 9e-47 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.016G010200 [exp] 159 / 1e-43 AT3G07810 413 / 2e-140 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014562 pacid=23170938 polypeptide=Lus10014562 locus=Lus10014562.g ID=Lus10014562.BGIv1.0 annot-version=v1.0 ATGGACCCTCACGTCAACAACGAGGAGCTCTCAGGCGGAGAAGCTGACGACAGCCATCAATCCAACAACCACCGCAACAACGATGACGACAGGTCTCTCT CTCACACTGGAGATGGAGCCAGTCCCGGAAAGATTTTCATTGGTGGTTTATCAAGAGATACTACGACTGCTGAGTTTATCGAGCATTTTGGTAAATATGG TGAAATTACGGATTCTGTCATTATGAAGGACCGAAAAACCGGTCAACCTCGTGGATTTGGGTTCATCACCTATGCAGACCCTTCTGTTGTTGATCAAGTC ATTCAGGACACACATATTATTAAGGATAAACAAGTAGGGCGGAGTTCTTGGTGTAATGTGGAAATTAAGCGAACTATACCTAGGGGAGCTGCTGGGTCTA AGGATTTCAGGACCAAGAAAATTTTTGTTGGTGGAATTCCTTCAGCAGTCACTGATGACGAGCTGAAAGAATTCTTTGCACAATTTGGAAGTGTTATGGA GCACCAGATCTTGAGGGACCATTCAACTAATCGCTCTCGTGGCTTTGGGTTTGTTACCTTTGAAGAAGAAGATGCAGTTGATGACCTACTTACAAAGGGA AATCGAATTGAATTTGCTGGAACTCAGGTTGAGATCAAGAAGGCAGAACCAAAGAAGCCTAATCCCCCAACACCTTCATTCAAACGTTACAATGATTCAA GGCCACCGTCTCGTGGTGGATTCAATGATAGTTACGGCGGGCCAGGAGGGCATACCTATGGCGGCGGTGGTGGCGGCAGCAGCTTATACAGATCAGGTGG TGCTTATGGAAGCAGTAGAATGAGTTCGTATGGTGGATATGGCGCTGGTGAATATGGAGGAGGATATGGAGGATACGGTGGTGGTGCAGGTGGAAGTGGT ATAGGGCCTTATAGAGGAGAGCCATCTGTTGGGTATTCAGGACGCTATGGAGGAGGCGGCGGCGGAGGTTATAGCAGAGGGTATGACATGGGTGGAGGTT ATGGTGGCCCTGCTGACAGCTATGGTGGTGGATATGGTGGTGCTCCTGGTGGTGGCTATGGAAGCAGCTATGAAACTGGCCTTGGCGGTGGCTATGGTGG TGGCGGTGCTGGTGGCTATGGAGGTGCTGGTGGTCCCGGTGGAGGTTCCTTCTATGGAAGTAGAGGTGGATACGGTGGAAATGGGGGATATGGGGGCGGC CCTCCAGCGGGTGCTGGTAGGTATCATCCATATTCAAGATGA
AA sequence Show only first row Show all	>Lus10014562 pacid=23170938 polypeptide=Lus10014562 locus=Lus10014562.g ID=Lus10014562.BGIv1.0 annot-version=v1.0 MDPHVNNEELSGGEADDSHQSNNHRNNDDDRSLSHTGDGASPGKIFIGGLSRDTTTAEFIEHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDQV IQDTHIIKDKQVGRSSWCNVEIKRTIPRGAAGSKDFRTKKIFVGGIPSAVTDDELKEFFAQFGSVMEHQILRDHSTNRSRGFGFVTFEEEDAVDDLLTKG NRIEFAGTQVEIKKAEPKKPNPPTPSFKRYNDSRPPSRGGFNDSYGGPGGHTYGGGGGGSSLYRSGGAYGSSRMSSYGGYGAGEYGGGYGGYGGGAGGSG IGPYRGEPSVGYSGRYGGGGGGGYSRGYDMGGGYGGPADSYGGGYGGAPGGGYGSSYETGLGGGYGGGGAGGYGGAGGPGGGSFYGSRGGYGGNGGYGGG PPAGAGRYHPYSR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40490			RNA-binding (RRM/RBD/RNP motif...		Lus10014562 [exp]	0	1
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10019137 [exp]	2.0	0.9436
AT1G27090			glycine-rich protein (.1)		Lus10037224 [exp]	4.0	0.9504
AT1G48900			Signal recognition particle, S...		Lus10016213 [exp]	4.9	0.9295
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	4.9	0.9425
AT2G15270			unknown protein		Lus10002814 [exp]	6.0	0.9183
AT1G04340			HR-like lesion-inducing protei...		Lus10021205 [exp]	6.6	0.9347
AT2G45060			Uncharacterised conserved prot...		Lus10042878 [exp]	7.9	0.9081
AT5G53800			unknown protein		Lus10014800 [exp]	9.5	0.9257
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	11.7	0.9253
AT3G53580			diaminopimelate epimerase fami...		Lus10025303 [exp]	11.8	0.9324

Compare expression of checked genes

Lus10014562 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.