Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39280 821 / 0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032123 [exp] 971 / 0 AT4G39280 807 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155000 [exp] 825 / 0 AT4G39280 782 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2) Potri.009G116100 [exp] 806 / 0 AT4G39280 759 / 0.0 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF01409 [flax] [poplar] tRNA-synt_2d tRNA synthetases class II core domain (F)
Representative CDS sequence Show only first row Show all	>Lus10014563 pacid=23170921 polypeptide=Lus10014563 locus=Lus10014563.g ID=Lus10014563.BGIv1.0 annot-version=v1.0 ATGGCGGAGGCGGCGATTCTCAGCTACTTGGCGACGCACGACGAAATTTCCGATTCTGGCCAGTTCGCTGCAGAGAGTGGGATCGACCATTCTGAGATTG TCAACGTGATCAAGAGTCTTCACGGTTTTCTCTATGTTGTTGCTAAGGACATAAAAAAGGAGACCTGGGTGCTTACTGATGAAGGTAAGAAGTATGCTGC AGAAGGCTCGCCGGAAGTTCAACTGTTCTTGGCTGTACCCTCAGAAGGTAGCATCTCAAAAGATGAACTGCAGGAAAAGCTTGACCCTGCAGTTTTCAAA ATTGGGTGCAACCAGGCTGGGAAGAACAAATGGGTGGAAATGGGAAAGCAAGTTTCTAGAAAGGTAGCACAAGTGGAAGACAAGGTGAAAGATCATCTTT TAAAGATACAAGAGGGACAGGCCATTGGCAAAGATGATATCAACCCTCTGAAAGCAAGGAAGCTAATTGTTTTACATGCTGTAAAGCTCAAGTTTCGTTT AATTAGTGGTGCTTACTACAAAAAATGCTCTTGTATTAGAACATGGAAGGGCTACTCTGTCACTAAGGGTCCTAGTTATGCTCCTCAAAGAAAGAAAGCT GCAACTGATTTGACCCGAGAAAATCTGCAGAGGGGTGACTGGAAGGATTTGGAGTTCAAAGAATATAATTTCAGTGCTAAAGGTCCGCCTTCTGATGGTG GCCATCTTCACCCACTTATGAAGGTGAAAGAACAAATAAAGGGTATTTTCCAAATGATGAACTTCGAGGAAATGCCAACAAATAGATACGTTGAGAGCAG CTTCTGGAACTTCGATGCCCTCTTCCAACCACAGCAACATCCTGCCCGTGATTCTCATGATACATTTTTCCTGAAAGTTCCTGCGACAACAAGAGAGCTT CCTGAAGATTATGTTCAGCGAGTGAAGGATGTCCATGAGTCTGGTGGATATGGCTCACGAGGATATACATATGAGTGGAAAAGAGAAGAAGCTAACAAGA ACCTTTTGCGCACTCATACCACGGCAATCTCTTCCAGAATGCTTTATCAATTAGCACAGGAAGCTAAGCAGCAAACCTTTACCCCTAAAAGGTACTTCTC GATAGACCGTGTTTTCAGAAATGAAGCAGTAGACCGTACACATCTTGCCGAGTTCCACCAGATAGAAGGTCTAGTGTGCGATCGAGGGCTTACACTAAGC CATTTGATTGGCGTGTTGGAAGACTTCTTTGCACGTCTAGGAATGTCAAAACTACGCTTCAAACCAGCTTACAACCCATATACTGAGCCAAGCATGGAGA TATTCAGTTATCATGAAGGGTTTAAGAAATGGGTGGAGATTGGAAATTCAGGAATGTTCAGGCCGGAAATGCTTCGTCCGATGGGATTCCCAGAAGATAT TAATGTCATTGCATGGGGGCTTTCACTTGAAAGACCTACGATGATATTGTATGGTTACGATAACATCAGAGATCTGTTCGGGCACAAGGTGGATCTTGGA CTCATGAAGAAGAATCCTTTGTGTCTCATTGGAATTAAATAG
AA sequence Show only first row Show all	>Lus10014563 pacid=23170921 polypeptide=Lus10014563 locus=Lus10014563.g ID=Lus10014563.BGIv1.0 annot-version=v1.0 MAEAAILSYLATHDEISDSGQFAAESGIDHSEIVNVIKSLHGFLYVVAKDIKKETWVLTDEGKKYAAEGSPEVQLFLAVPSEGSISKDELQEKLDPAVFK IGCNQAGKNKWVEMGKQVSRKVAQVEDKVKDHLLKIQEGQAIGKDDINPLKARKLIVLHAVKLKFRLISGAYYKKCSCIRTWKGYSVTKGPSYAPQRKKA ATDLTRENLQRGDWKDLEFKEYNFSAKGPPSDGGHLHPLMKVKEQIKGIFQMMNFEEMPTNRYVESSFWNFDALFQPQQHPARDSHDTFFLKVPATTREL PEDYVQRVKDVHESGGYGSRGYTYEWKREEANKNLLRTHTTAISSRMLYQLAQEAKQQTFTPKRYFSIDRVFRNEAVDRTHLAEFHQIEGLVCDRGLTLS HLIGVLEDFFARLGMSKLRFKPAYNPYTEPSMEIFSYHEGFKKWVEIGNSGMFRPEMLRPMGFPEDINVIAWGLSLERPTMILYGYDNIRDLFGHKVDLG LMKKNPLCLIGIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	0	1
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	1.0	0.9115
AT3G01330	E2F_DP	E2FF, E2L2, DEL...	E2F-LIKE 2, DP-E2F-like protei...		Lus10005840 [exp]	2.0	0.9007
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10004552 [exp]	2.8	0.9078
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	4.2	0.9075
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10037326 [exp]	4.2	0.8893
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Lus10035745 [exp]	5.2	0.8708
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	5.5	0.8947
AT2G45620			Nucleotidyltransferase family ...		Lus10015854 [exp]	6.9	0.8661
AT4G25315			Expressed protein (.1.2)		Lus10019851 [exp]	9.2	0.8552
AT5G23740		RPS11-BETA	ribosomal protein S11-beta (.1...		Lus10008806 [exp]	9.3	0.8490

Compare expression of checked genes

Lus10014563 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.