Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27325 1221 / 0 hydrolases, acting on ester bonds (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032122 [exp] 1982 / 0 AT3G27325 1289 / 0.0 hydrolases, acting on ester bonds (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338000 [exp] 1473 / 0 AT3G27325 1367 / 0.0 hydrolases, acting on ester bonds (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF07819 [flax] [poplar] PGAP1 PGAP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10014564 pacid=23170894 polypeptide=Lus10014564 locus=Lus10014564.g ID=Lus10014564.BGIv1.0 annot-version=v1.0 ATGCAAGGATTCAAGGCCAAACTTAGGGTGGCGGTACCGGTTGTGCTAACTCTGTGGATTTCTCTTCTTGGTTTGTACGGGCTGTTGAAGCCAATCTCCA ATGGATGTGCTATGACTTACATGTATCCAACTTACATTCCCATTTCCACCACCACGAATGGTGATGCTGCTGCTACTTCCGGTGGTAAGTATGGGTTGCA CCTTTCACATGAAGGTTGGAAGAAGATCGATTTCGAGGAGCATCTCAAGCAGCTTAGTGGCGTTCCTGTTCTTTTTATCCCTGGAAATGGTGGCAGCTTC AAACAGGCAATGCCTTCCTCTCTTTTCTCATCTCCTCTCTTTCTCACTTACAGTGATCTCGTAAGGTCTTTGGCTGCTGAATGTGAGAGGGCATACCAAA GAGGTCCTCTAGAGAGGACATTTCATCATGAAGCAAGTTTAACTCCGGAGGAAGGAGGTGTGGACATGCATTCGGCTGACTTTCAATTGCCCGGCCAGTA CAGTAGTAAGATAGATTGGTTTGCAGTGGATCTTGAAGGTGAACATTCTGCAATGGATGACCAGATACTTGAAGAACACACTGAATATGTTGTGTATGCC ATTCACAGGATTTTGGATCAGTATAAGCATTCTCATGATGTGCGAGAAAAAGAAGGTGCTGCCTCTTCTGGTACTGTGCCAAAGAGTGTGATATTGGTCG GTCATTCCATGGGTGGTTTTGTTGCTCGAGCCGCTATAATCCATCCCCGGCTGAGGAAGTCTGTTGTTGAGACTATTCTTACACTTTCAACCCCACATCA GTTACCTCCAGTGGCTTTGCAGCCATCATTGGGAAACTACTTTGCTCGTGTGAACAATGAATGGAGGAAAGGATATGAGGTCCAAACCACTCAAGCTGCA CCTTTTGTGTCTGATCCATCGCTCTCCAATGTCATTGTTGTTTCAATCTCTGGTGCTTATAATGATTATCAGGTACGGACAAAGTTTGAGACCCTGGATG GAATTGTGCCTCCGACTCATGGATTTATGATTAGCAGTACTGGCATGAGAAATGTATGGCTATCCATGGAGCATCAGGCTATTTTATGGTGCAACCAATT AGTTGTACAAGTATCACACACACTCCTAAGTTTGATAGATGCAAGAACAGGTCTTCCATTTCCCGATACACAGAAAAGGCTTTCCATATTAGCAAGGATG CTTCGTAGTGGGATACCTGATGCTTTCCAGTGGACAAGTCAGCCACATTCTAATGATCCAAGCAAAAATCTAAGTGCTTCTCAAGTGGCTACTTTACCTG GTTGCCCCAGCAATCTTGTCTGGAAAGATGATGGACTGGAGAAGGATCTATATATCCAAACTAGTACTATGACTGTCTTGGCCATGGACGGGAGAAGACG ATGGTTGGACATACATAAATTGGGTTCAAATGGGAAGAGTCATTTTGTGTTTGTGACTAATCTTGCTCCTTGTTCTGGGGTGAGACTTCACCTGTGGTCT GAAAAAGGAAAGTCAAATTCAAACAAAATAGTTGAGGTTACATCCAAGCTGGTGCAGATTCCATCAGGACCAGCTCCAGTACAGGCTGAGCCTGGAAGAC AGACCGAGCAAGCACCTCCTTCTGCTTTACTTTGTCTAACTCCTGAAGATATGCTAGGCTTCAGTTTCCTGATGATTTCAATCGCTCCTCGTCCGACTGT TTCAGGCCGACCTCCACCTCCAGCTTCTATGGCAGTTGGGCAGTTCTTTGATCCGAAGGAGGGAGAAAGAGAGTTATCCGCTCCTGTGATGCTTCTATCT GCCTTTTCTGCAAAGGATATGGTGCTGGAAGAGGATCATCCCCTAGCTTTTAATTTATCCTTTGATGTCAGTCTTGGCCTTTTGCCAACTTCATTGTCTC TGGAAACTACTGGATGTGGAATAAAGAAGTCTGGACTTCCTGACGAAGAGGCTGGAGATATGGAAACTAATAATCTTTGCAAATTGCGGTGTTTTCCACC TGTTGCAGTGGCCTGGGATCCCACTTCCGGGCTTCATATCTTCCCCAGTTTGTATAGTGAAACTGTTACAGTTGACTCATCACCAGCCCTTTTGAGTTCC TTTCCAGGATCAGAAAAAACCTCTATACTGTTACTGGTTGATCCTCATTGTTCGTATAAATTGAGCTTTGCTGCTTCTCAAACAGCAGTTGCAGGCAGGT TTTTGCTTTTGTATAGCTCGCAGATGGTGGCTTTCTGCTTTGCAGCTATCTTTTTTGCTTTAATGCAGCAAGTTCATGCATGGGATCTAGATTTGCCTAT ACCGTCAGTGCTTACAGCCATGGCTTCCAATTTAAGGATGTCTCTGCCGTTTATGCTTCTGGGCTTCACCCCCATTCTAGTTTCACTATTTCTTTCGATG CTAAATTCACAGCCTCTTCCTTCAATTGCAAGCTTCATTGTTGTGTCCATGATTTGCTATGTATTTGCAAATGGGGCTGTAATTCTACTGGTACTGGGGT CCCAATCTCTCTTCTATGCAGCTGCGTTTATGCATGTGCTCCTCAAGTCAAGGTGGCAATACTGGGAAGAAAATTTCCGCTTTGTATATCTTCGCTGGTT TATTACTCTTTCTGCTAGGGTCTTCTCATTTAAGGCCATGAGGGTAATAAGAGCCAGCCCATCTTTGGTCACTGCGTTAACTGCAGTTACTCTGGGATGT TTTGTTCACCCAGCATTGGGTTTACTTGTCCTCCTCTTAGCTCATGCCCTTCGCAGTCACAATGCTTTATGCAGTTTTTTGACAGCTTCGTTTCGCAGCA GCTACACGCGAAATAAGAACTTCCTTGGGTATGAGGGTAAAGATAAAGAAAGTTCTTGGCCACCTTCATCAAAGCATGAAATTGGGGTCAACCAGAATCC CTCGCTGTTGGAAGAAAATAGCTCCAACAGTCCAAAGAGTTTCAGTGACACGCAATTAGAGATCTTCCATCACCAACATGGGTTGCTGATCCTGCATCTC ATGGCAGCTCTGATGTTCATCCCTTCTTTTGTGGCTTGGTTGCAGAGAATAGGCACGGGTCATAGCTTCCCATGGTTCCTGGATTCAACCATGTGTATTG GAGTCGTTCTTCACGGTGTCTTCTGCTCGAATCCAGACTTCAATTCCTTTCTTTCGTTTGTGATATGGAAGGAAGTTAAATTGGATTCGATCTATCTTCT TGCTGGCCTCTATTCATATATAGCTGGGTTGGGATTGGCTCCCTATAAAGTCTTTTACCCAATTGCAGTCATAGGGTTCTTATCACTTGCTGTGAAGCTG TTACATAAAAGGACCAAGGATAACGGAGATCCATCACGTCTGGGACGGAAAAAGCATTCTCATAGACACTGA
AA sequence Show only first row Show all	>Lus10014564 pacid=23170894 polypeptide=Lus10014564 locus=Lus10014564.g ID=Lus10014564.BGIv1.0 annot-version=v1.0 MQGFKAKLRVAVPVVLTLWISLLGLYGLLKPISNGCAMTYMYPTYIPISTTTNGDAAATSGGKYGLHLSHEGWKKIDFEEHLKQLSGVPVLFIPGNGGSF KQAMPSSLFSSPLFLTYSDLVRSLAAECERAYQRGPLERTFHHEASLTPEEGGVDMHSADFQLPGQYSSKIDWFAVDLEGEHSAMDDQILEEHTEYVVYA IHRILDQYKHSHDVREKEGAASSGTVPKSVILVGHSMGGFVARAAIIHPRLRKSVVETILTLSTPHQLPPVALQPSLGNYFARVNNEWRKGYEVQTTQAA PFVSDPSLSNVIVVSISGAYNDYQVRTKFETLDGIVPPTHGFMISSTGMRNVWLSMEHQAILWCNQLVVQVSHTLLSLIDARTGLPFPDTQKRLSILARM LRSGIPDAFQWTSQPHSNDPSKNLSASQVATLPGCPSNLVWKDDGLEKDLYIQTSTMTVLAMDGRRRWLDIHKLGSNGKSHFVFVTNLAPCSGVRLHLWS EKGKSNSNKIVEVTSKLVQIPSGPAPVQAEPGRQTEQAPPSALLCLTPEDMLGFSFLMISIAPRPTVSGRPPPPASMAVGQFFDPKEGERELSAPVMLLS AFSAKDMVLEEDHPLAFNLSFDVSLGLLPTSLSLETTGCGIKKSGLPDEEAGDMETNNLCKLRCFPPVAVAWDPTSGLHIFPSLYSETVTVDSSPALLSS FPGSEKTSILLLVDPHCSYKLSFAASQTAVAGRFLLLYSSQMVAFCFAAIFFALMQQVHAWDLDLPIPSVLTAMASNLRMSLPFMLLGFTPILVSLFLSM LNSQPLPSIASFIVVSMICYVFANGAVILLVLGSQSLFYAAAFMHVLLKSRWQYWEENFRFVYLRWFITLSARVFSFKAMRVIRASPSLVTALTAVTLGC FVHPALGLLVLLLAHALRSHNALCSFLTASFRSSYTRNKNFLGYEGKDKESSWPPSSKHEIGVNQNPSLLEENSSNSPKSFSDTQLEIFHHQHGLLILHL MAALMFIPSFVAWLQRIGTGHSFPWFLDSTMCIGVVLHGVFCSNPDFNSFLSFVIWKEVKLDSIYLLAGLYSYIAGLGLAPYKVFYPIAVIGFLSLAVKL LHKRTKDNGDPSRLGRKKHSHRH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27325			hydrolases, acting on ester bo...		Lus10014564 [exp]	0	1
AT5G16210			HEAT repeat-containing protein...		Lus10028491 [exp]	2.8	0.9165
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	4.6	0.9349
AT5G24710			Transducin/WD40 repeat-like su...		Lus10028092 [exp]	7.5	0.9319
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	10.7	0.9131
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023393 [exp]	11.1	0.9211
AT5G27970			ARM repeat superfamily protein...		Lus10000943 [exp]	12.7	0.9091
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	14.5	0.9094
AT5G42400		SDG25, ATXR7	ARABIDOPSIS TRITHORAX-RELATED7...		Lus10016051 [exp]	18.0	0.8685
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	21.2	0.9051
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	21.2	0.9042

Compare expression of checked genes

Lus10014564 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.