Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G13690 252 / 7e-87 ATE1 ATPase E1 (.1) AT5G61030 79 / 1e-17 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G08000 74 / 6e-17 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 65 / 3e-14 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT1G74230 67 / 2e-13 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT5G04280 66 / 3e-13 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 64 / 3e-13 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT3G23830 63 / 4e-13 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT2G21660 62 / 2e-12 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G13860 57 / 3e-11 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004641 [exp] 316 / 3e-112 AT1G13690 277 / 8e-97 ATPase E1 (.1) Lus10026675 [exp] 171 / 6e-56 AT1G13690 156 / 5e-50 ATPase E1 (.1) Lus10015146 [exp] 74 / 5e-17 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10031534 [exp] 73 / 6e-17 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10032591 [exp] 73 / 1e-16 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 71 / 1e-15 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 69 / 4e-15 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 69 / 6e-15 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10017852 [exp] 69 / 2e-14 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G097500 [exp] 262 / 6e-91 AT1G13690 230 / 6e-78 ATPase E1 (.1) Potri.010G157000 [exp] 213 / 1e-71 AT1G13690 200 / 2e-66 ATPase E1 (.1) Potri.014G157300 [exp] 77 / 2e-18 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.012G061600 [exp] 70 / 1e-14 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 69 / 2e-14 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.017G059000 [exp] 64 / 1e-13 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.006G208500 [exp] 64 / 2e-13 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.009G116400 [exp] 62 / 3e-12 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.001G319900 [exp] 60 / 9e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.010G228700 [exp] 61 / 2e-11 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10014565 pacid=23170934 polypeptide=Lus10014565 locus=Lus10014565.g ID=Lus10014565.BGIv1.0 annot-version=v1.0 ATGGCGATGCAGGCGGCGGTGCAGAAGAACACACTGTACGTCGGAGGTTTGGCAGAGGAAGTCAACGAGTCAATCCTCCATGCGGCGTTCATCCCATTCG GAGACATTAAAGACGTCAAGACTCCACTAGATCAGGCGACGCAGAAGCACCGGTCCTTCGGCTTCGTTACCTTCCTCGAGAAGGAGGATGCGTCATCCGC CATGGACAACATGGACGGAGCCGAGCTCTACGGGCGGGTCCTCACCGTTAACTACGCGCTCCCGGAGAAGATCAAGGGTGGTGAACAGGGATGGGCTGCT CAACCAATCTGGGCAGATGCCGATACATGGTTCGAGCGCCAGCAGCAAGAAGAGGAGATGCAGCGATTGCAAGCGGAAAATCGCGCGGCAATGCAGGCTG CCGAGGACTTGCACAGAAAGAAACAGGCCGAGGAGCGAGATGGTGAGAAGGACGAAGCAGACGACCCGATGGCAAGAGCTGAAGCCGAAGTTTTGAACCA GAACGGTTCGAGCCAAGGATAA
AA sequence Show only first row Show all	>Lus10014565 pacid=23170934 polypeptide=Lus10014565 locus=Lus10014565.g ID=Lus10014565.BGIv1.0 annot-version=v1.0 MAMQAAVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDASSAMDNMDGAELYGRVLTVNYALPEKIKGGEQGWAA QPIWADADTWFERQQQEEEMQRLQAENRAAMQAAEDLHRKKQAEERDGEKDEADDPMARAEAEVLNQNGSSQG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G13690		ATE1	ATPase E1 (.1)		Lus10014565 [exp]	0	1
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	7.5	0.8792
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	11.0	0.8588
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	15.9	0.8291
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Lus10038778 [exp]	19.3	0.8584
AT5G23710			DNA binding;DNA-directed RNA p...		Lus10009479 [exp]	20.0	0.8217
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	20.1	0.8618
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	21.3	0.8526
AT3G53140			O-methyltransferase family pro...		Lus10014400 [exp]	36.9	0.7580
AT2G20585		NFD6	nuclear fusion defective 6 (.1...		Lus10002171 [exp]	38.3	0.8499
AT5G62290			nucleotide-sensitive chloride ...		Lus10027193 [exp]	45.4	0.8370

Compare expression of checked genes

Lus10014565 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.