Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69210 120 / 7e-34 Uncharacterised protein family UPF0090 (.1.2) AT1G77122 92 / 1e-22 Uncharacterised protein family UPF0090 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026674 [exp] 184 / 2e-59 AT1G69210 249 / 5e-83 Uncharacterised protein family UPF0090 (.1.2) Lus10018923 [exp] 91 / 4e-22 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1) Lus10028624 [exp] 87 / 1e-20 AT1G77122 283 / 1e-93 Uncharacterised protein family UPF0090 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G157300 [exp] 140 / 1e-41 AT1G69210 239 / 8e-78 Uncharacterised protein family UPF0090 (.1.2) Potri.002G071700 [exp] 94 / 2e-23 AT1G77122 271 / 6e-90 Uncharacterised protein family UPF0090 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02576 [flax] [poplar] DUF150 RimP N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014566 pacid=23170920 polypeptide=Lus10014566 locus=Lus10014566.g ID=Lus10014566.BGIv1.0 annot-version=v1.0 ATGTGGTGGGAGGAAGATGACACGGTGGCAGAAAGGTTGAAGATGATTGGGTGGTTTGTGGATAGCGTTTGTTGGGGTTGGATGAAATGGAATCGCAGTT CATCTTGCTCTGCTCTGCAACCACAGAGAGAAAGGGAAACAAATCTGATATGGTTTTCCGGGATCGAGGAATTTGAATGCTATTGTAGACAATACAACAA GAGATTGGAGGAAGTTGGAGCCCTCGGCGAAATCCCAGACAATCTGGCGGTCGAGGTATCCTCTTCAGGTGTTGATAGACTACTGAAGGTACCAGGTGAT CTGGACCGGTTCAAGGACATGGCGATGAACGTGTGCTACATAGAAGACGAGGAGTCCAATCGTCAAGCCGAAAAGAATGGAGCCTTCTTCTTAGAGTCGA TAGACACTGAAACGAAAAACTGCATGTGGAAGTTGGCAGACATGAAGGAGAACAAAGATCTTCTGAACAAAGGAGACCTTTAA
AA sequence Show only first row Show all	>Lus10014566 pacid=23170920 polypeptide=Lus10014566 locus=Lus10014566.g ID=Lus10014566.BGIv1.0 annot-version=v1.0 MWWEEDDTVAERLKMIGWFVDSVCWGWMKWNRSSSCSALQPQRERETNLIWFSGIEEFECYCRQYNKRLEEVGALGEIPDNLAVEVSSSGVDRLLKVPGD LDRFKDMAMNVCYIEDEESNRQAEKNGAFFLESIDTETKNCMWKLADMKENKDLLNKGDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69210			Uncharacterised protein family...		Lus10014566 [exp]	0	1
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10029233 [exp]	1.0	0.8475
AT5G16100			unknown protein		Lus10020810 [exp]	2.8	0.6975
AT5G42290			transcription activator-relate...		Lus10021820 [exp]	6.2	0.7850
					Lus10023763 [exp]	9.9	0.8024
AT1G24620			EF hand calcium-binding protei...		Lus10029660 [exp]	13.1	0.6724
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10006923 [exp]	25.1	0.6527
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	27.2	0.6878
AT1G03670			ankyrin repeat family protein ...		Lus10013878 [exp]	28.4	0.5939
AT2G26730			Leucine-rich repeat protein ki...		Lus10032162 [exp]	35.0	0.6167
AT5G23510			unknown protein		Lus10029154 [exp]	35.8	0.6806

Compare expression of checked genes

Lus10014566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.