Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34620 264 / 6e-87 Mitochondrial transcription termination factor family protein (.1) AT2G03050 197 / 7e-61 SOLDAT10, EMB93 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) AT2G36000 139 / 2e-38 EMB3114 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) AT3G18870 133 / 1e-36 Mitochondrial transcription termination factor family protein (.1) AT1G78930 100 / 5e-23 Mitochondrial transcription termination factor family protein (.1) AT2G21710 90 / 1e-19 EMB2219 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) AT5G55580 89 / 3e-19 Mitochondrial transcription termination factor family protein (.1) AT4G14605 87 / 9e-19 Mitochondrial transcription termination factor family protein (.1) AT4G38160 77 / 2e-15 PDE191 pigment defective 191, Mitochondrial transcription termination factor family protein (.1.2.3) AT2G44020 62 / 3e-10 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032120 [exp] 462 / 1e-164 AT2G34620 300 / 2e-101 Mitochondrial transcription termination factor family protein (.1) Lus10030451 [exp] 159 / 5e-46 AT2G03050 283 / 3e-95 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10026612 [exp] 155 / 1e-44 AT2G03050 285 / 4e-96 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 151 / 7e-43 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10021297 [exp] 150 / 1e-42 AT2G36000 264 / 8e-87 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10029422 [exp] 140 / 2e-38 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 140 / 3e-38 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10026325 [exp] 134 / 1e-36 AT3G18870 278 / 3e-93 Mitochondrial transcription termination factor family protein (.1) Lus10042342 [exp] 134 / 3e-36 AT3G18870 276 / 1e-92 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G081400 [exp] 285 / 7e-95 AT2G34620 392 / 5e-138 Mitochondrial transcription termination factor family protein (.1) Potri.010G167400 [exp] 157 / 2e-45 AT2G03050 303 / 3e-103 SINGLET OXYGEN-LINKED DEATH ACTIVATOR 10, EMBRYO DEFECTIVE 93, Mitochondrial transcription termination factor family protein (.1) Potri.016G072200 [exp] 151 / 1e-42 AT2G36000 280 / 1e-92 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.006G205000 [exp] 149 / 1e-41 AT2G36000 284 / 2e-94 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Potri.004G150600 [exp] 128 / 1e-34 AT3G18870 311 / 1e-106 Mitochondrial transcription termination factor family protein (.1) Potri.007G001800 [exp] 114 / 1e-27 AT1G78930 633 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.001G361800 [exp] 93 / 1e-20 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.017G067600 [exp] 91 / 5e-20 AT4G14605 571 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.009G116200 [exp] 84 / 2e-17 AT2G21710 748 / 0.0 embryo defective 2219, Mitochondrial transcription termination factor family protein (.1) Potri.013G116700 [exp] 72 / 2e-13 AT2G44020 764 / 0.0 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10014567 pacid=23170910 polypeptide=Lus10014567 locus=Lus10014567.g ID=Lus10014567.BGIv1.0 annot-version=v1.0 ATGTCATCGTTACACTCTGCATTCTCCATTTCAGCATCATCATCATCATCATCATCACAAGCTGAGCACCATCAACTCACCATTTCTTCAACAAAGCTCT CAGCCAAACCAACAACCAACAAGAACAAAAATACCCTCCACTTGAACAACCCACTCCTCCATAAGAACCTCACCACCCAAATCAAGGAGAAAATCCTCTG CCTCGAAATCATGGGCGTCGACTCCGGCAAGGCCCTCTCCAAAAACTCAGACCTCCACTCCGCTTCCCTCGACTCAATCCACGTCATCATCTCCTTCCTC CACTCAAAGGGCATCCACCACAAGGACTTCCCTCGAATCTTCGGAATGTGCCCTCAGCTCCTCACTTCCGACGTCGCATCACACCTCTCCCCCGTCTTCT CCTTCCTCTCCGACGATCTTAACGTCCCCGACTACAAATTCCGGAAAATCATCACCAAATGCCCCCGCCTGTTGACTTCCGACGTTGACCGCCAGCTCAG ACCTAACTCAACCTACCTGAGGGATACGATCGGGTTCCAACAGCGGCAATTGGAAACCCTAATTTACACCGATCCTGTTTTGTTAGTCTCCAACGTGGAG AATACTCTGGTTCCTAAGCTCAAGTACTTGGAGGAGAGCGTTGGACTGACGGAGGAGGAGATTTTCGGGATGGTGAGGAGGTTTCCGTCGTTGTTGACGT TTAGTGTGGAGAACAATTTGAAGCCTAAGTATGAGTTCTTTGTTGGGGAGATGGAAGGGAGAGAATTGGAGGAGATTAAGGCGTTTCCGCATTATTTTGG GTTTAGTTTGGAGAATCAGATCAAACCCAGATACTTGCAGGTTTTGGATAGAGGGATGATGAAGATGCCTCTTCCGCTTCTGCTCAAGACCACTGATCCT CAGTTCCAGCTCCTGCTTTCTCAGTCCTCCTCTGTATGGAACTTCTTGTTAAATGTACATCGATTTTTTTTAGCTCTGTTTCGATATAAATGTAATGATC TGTCTCAATCGACTAATTCCACGAACTACTGGTTTTGTGTGGAATCAGTTGGAAGCCAATGA
AA sequence Show only first row Show all	>Lus10014567 pacid=23170910 polypeptide=Lus10014567 locus=Lus10014567.g ID=Lus10014567.BGIv1.0 annot-version=v1.0 MSSLHSAFSISASSSSSSSQAEHHQLTISSTKLSAKPTTNKNKNTLHLNNPLLHKNLTTQIKEKILCLEIMGVDSGKALSKNSDLHSASLDSIHVIISFL HSKGIHHKDFPRIFGMCPQLLTSDVASHLSPVFSFLSDDLNVPDYKFRKIITKCPRLLTSDVDRQLRPNSTYLRDTIGFQQRQLETLIYTDPVLLVSNVE NTLVPKLKYLEESVGLTEEEIFGMVRRFPSLLTFSVENNLKPKYEFFVGEMEGRELEEIKAFPHYFGFSLENQIKPRYLQVLDRGMMKMPLPLLLKTTDP QFQLLLSQSSSVWNFLLNVHRFFLALFRYKCNDLSQSTNSTNYWFCVESVGSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G34620			Mitochondrial transcription te...		Lus10014567 [exp]	0	1
AT1G53280		AtDJ1B	DJ-1 homolog B, Class I glutam...		Lus10009525 [exp]	1.7	0.8958
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	2.8	0.9157
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	3.2	0.9115
AT4G14540	CCAAT	NF-YB3	"nuclear factor Y, subunit B3"...		Lus10022514 [exp]	5.9	0.8621
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Lus10007575 [exp]	7.7	0.8666
AT4G38460		GGR	geranylgeranyl reductase (.1)		Lus10025096 [exp]	9.8	0.8838
AT2G45590			Protein kinase superfamily pro...		Lus10041395 [exp]	10.0	0.8537
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10026909 [exp]	10.6	0.8596
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10020105 [exp]	10.8	0.8496
AT4G22250			RING/U-box superfamily protein...		Lus10035335 [exp]	14.8	0.8408

Compare expression of checked genes

Lus10014567 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.