Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G27330 552 / 0 zinc finger (C3HC4-type RING finger) family protein (.1) AT5G40720 546 / 0 Domain of unknown function (DUF23) (.1) AT1G27200 431 / 3e-145 Domain of unknown function (DUF23) (.1) AT4G37420 261 / 2e-79 Domain of unknown function (DUF23) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032118 [exp] 1010 / 0 AT3G27330 570 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10030815 [exp] 433 / 8e-146 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013291 [exp] 424 / 3e-142 AT1G27200 577 / 0.0 Domain of unknown function (DUF23) (.1) Lus10010731 [exp] 403 / 3e-134 AT1G27200 555 / 0.0 Domain of unknown function (DUF23) (.1) Lus10036676 [exp] 401 / 1e-133 AT1G27200 543 / 0.0 Domain of unknown function (DUF23) (.1) Lus10013221 [exp] 293 / 2e-91 AT4G37420 469 / 9e-160 Domain of unknown function (DUF23) (.1) Lus10016022 [exp] 278 / 2e-86 AT4G37420 488 / 6e-168 Domain of unknown function (DUF23) (.1) Lus10012255 [exp] 245 / 2e-73 AT4G37420 437 / 2e-147 Domain of unknown function (DUF23) (.1) Lus10030740 [exp] 135 / 6e-34 AT4G37420 292 / 3e-92 Domain of unknown function (DUF23) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336766 [exp] 670 / 0 AT3G27330 637 / 0.0 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G192000 [exp] 407 / 1e-135 AT1G27200 585 / 0.0 Domain of unknown function (DUF23) (.1) Potri.010G039000 [exp] 406 / 4e-135 AT1G27200 582 / 0.0 Domain of unknown function (DUF23) (.1) Potri.005G252100 [exp] 288 / 3e-89 AT4G37420 540 / 0.0 Domain of unknown function (DUF23) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01697 [flax] [poplar] Glyco_transf_92 Glycosyltransferase family 92
Representative CDS sequence Show only first row Show all	>Lus10014568 pacid=23170956 polypeptide=Lus10014568 locus=Lus10014568.g ID=Lus10014568.BGIv1.0 annot-version=v1.0 ATGAAGGATCACCGGCGGAGGCGTGACGTCATCTGTTCCAGGTTTTTCTGGTGCACTCTCTTCTTCGTCGTTTCCTGCGTCCTCTTGACCGGATTCAATT TCTCCTCCTCCTTCCGCTTCCTCTTCTCTCTTCCTACTGCAGAAAGGCTGCAGCCGGAGATACTGCCCAGATGGCGGACTATGGATGCAGTCTCTGCCGC TGATTTATCTTATCGGAGGTTGGACCCGAAGAGCAAGATATCGATTCGGGACGCCGTTATCTTTCCTGACCAGGTTCTTCTCTTCCTAAACTACCCTCGT TCCTCCACGTCAGCTCGATTGTCGTTGACTCGAGACGACATCCTCGACTGCGTTTACTCCAACTCCTCCTCTTCCTCCTCGCGGCCGCCCTACCGCGTGG ACGGCGACATCGTGCGGTGTCCGCTCGACCCACGTGGCGCAATCGTATTTTCCCTCTCTTTGAAATCGTACGGCGGAGGTCGTTGGGTTTTGCTTCCGGT CCCCGCTCGTACGTGGCGCACGCTGGTTTATGAAGCTATAATCGACCGCGATAATACTACGGTGGTCTTCGTGAAGGGGCTCAATCTACGGCCTGATAAG CTCTACGATGGCAACAGATTTGAGTGCGTGTACGGCTGGGATTCTCGGCGGCCGCGGTTGAATTTGCGATCCGAAGTAATCTCCATCGCTCAAGAGATCG TACGGTGCAAAACGCCTCTCAGCCTCCTCTCCTCCGCCAGGTCATTCAACGGTTCGGTCAAGGTCTCGATTCGGGTCAAAGGCAGGGGAACGCTCCATTC AGTAGCCCGCCCCAAACCCCTACCAGAACCCGACTTGGTTCGGGATTCAACCAAATCGAACCAGTTATGCATATGCACTATGATCCGGAATCAGGCGAGA TTCATAAAAGAATGGGTGATGTACCACGGCGAGATTGGAGTTGAGAAATGGTTCATCTACGATAACAACAGCGACGACGATCTCGAATCAACGATCGGGT TGTTATCTGAATCCGGGTTCAACATTACCCGACACATCTGGCCGTGGGTGAAGAGCCAGGAAGCCGGGTTCGCTCACTGTGCGATTCGAGCACGGCCGTG GTGCGAATGGGTCGGATTCATCGACGTGGACGAGTTCCTCAACGTCCCTTCGGGTCAATCATTACCGGAGGCTTTGAAGAACCAAACCGAAACAGTTCCT GAAAAACGAGTCGGGGAAATTCGGGTTCCCTGCCACAGTTTCGGTCCATCAGGGTTGACCCGGGTCCCGACCCAGGGCGTGATAGCCGGGTACACATGCC GGCTGGTATGGCCGGAGAGGCACAAGAGCATAGTGAGACCGGAGGCGTTGAATTCGTCGCTGATCAACGTGGTGCACCATTTCCATCTCCGAGAAGGATT CGGACACGTGGATGTGGATCGAGGGTGGATGGTGATTAATCACTACAAGTACCAAGTCTGGGAAGTGTTCAAGGAGAAGTTCTACAGGAGAGTGGCAACT TATGTGGCTGATTGGCAGGACGAATTGAATGTCGGGTCGAAAGATCGAGCACCCGGATTGGGGACCAAGGCGGTGGAGCCGGCGGATTGGTCGAGTAGGT TCTGTGAGGTGAATGATACGGGGCTGAAGGATTTTGTTATGCGGAGGTTTTCGGATCCATTGACGAAGGTTCTGCCGTGGGAGGAGGATGGAGCTGAAAA GATGAGGCAAGGAGGAGAGTTTTGGTAG
AA sequence Show only first row Show all	>Lus10014568 pacid=23170956 polypeptide=Lus10014568 locus=Lus10014568.g ID=Lus10014568.BGIv1.0 annot-version=v1.0 MKDHRRRRDVICSRFFWCTLFFVVSCVLLTGFNFSSSFRFLFSLPTAERLQPEILPRWRTMDAVSAADLSYRRLDPKSKISIRDAVIFPDQVLLFLNYPR SSTSARLSLTRDDILDCVYSNSSSSSSRPPYRVDGDIVRCPLDPRGAIVFSLSLKSYGGGRWVLLPVPARTWRTLVYEAIIDRDNTTVVFVKGLNLRPDK LYDGNRFECVYGWDSRRPRLNLRSEVISIAQEIVRCKTPLSLLSSARSFNGSVKVSIRVKGRGTLHSVARPKPLPEPDLVRDSTKSNQLCICTMIRNQAR FIKEWVMYHGEIGVEKWFIYDNNSDDDLESTIGLLSESGFNITRHIWPWVKSQEAGFAHCAIRARPWCEWVGFIDVDEFLNVPSGQSLPEALKNQTETVP EKRVGEIRVPCHSFGPSGLTRVPTQGVIAGYTCRLVWPERHKSIVRPEALNSSLINVVHHFHLREGFGHVDVDRGWMVINHYKYQVWEVFKEKFYRRVAT YVADWQDELNVGSKDRAPGLGTKAVEPADWSSRFCEVNDTGLKDFVMRRFSDPLTKVLPWEEDGAEKMRQGGEFW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G27330			zinc finger (C3HC4-type RING f...		Lus10014568 [exp]	0	1
AT5G53730			Late embryogenesis abundant (L...		Lus10032932 [exp]	8.7	0.8621
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	9.8	0.8639
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10007948 [exp]	11.0	0.8596
AT5G53830			VQ motif-containing protein (....		Lus10005543 [exp]	11.6	0.8532
AT4G34950			Major facilitator superfamily ...		Lus10034491 [exp]	13.0	0.8364
AT4G30190		PMA2, AHA2	PLASMA MEMBRANE PROTON ATPASE ...		Lus10013483 [exp]	13.5	0.8344
AT2G43060	bHLH	AtIBH1, bHLH158	ILI1 binding bHLH 1 (.1)		Lus10025511 [exp]	14.0	0.8534
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Lus10036121 [exp]	17.3	0.8378
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	17.3	0.8508
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	20.8	0.8229

Compare expression of checked genes

Lus10014568 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.