Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40710 252 / 3e-84 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT5G63280 241 / 1e-79 C2H2ZnF C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032116 [exp] 431 / 1e-154 AT5G40710 289 / 3e-98 zinc finger (C2H2 type) family protein (.1) Lus10014794 [exp] 248 / 7e-83 AT5G63280 257 / 3e-86 C2H2-like zinc finger protein (.1) Lus10001106 [exp] 196 / 4e-63 AT5G63280 221 / 5e-73 C2H2-like zinc finger protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336500 [exp] 288 / 5e-98 AT5G40710 343 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.015G090300 [exp] 265 / 5e-89 AT5G63280 320 / 2e-110 C2H2-like zinc finger protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014570 pacid=23170926 polypeptide=Lus10014570 locus=Lus10014570.g ID=Lus10014570.BGIv1.0 annot-version=v1.0 ATGGCAATTTTCGCACCAAGATTCTGCATTTTATTTATCTTTCTCTGTATTGCAATCTCTTTGCAATCGAAGAACTGTCATTCTTTCTCTGCTGCTGTAC TTCAGGGTAATCAAGGATCCTCTGTTCCAAGAACCCTAGATGAGGAAAAGGGGAATGCTCATGAGGTGCATTGTTCAAGAGAGAGGAGTAGGGCAGCCTG GAAAATTGTTGAACAGTACTTAATGCCCTTTGTAGAGAAAGAAAAACACAGCATTTCAAAGAAGTGTCCACTTCACCCTGAGAATGATCTCTACCGTCTG CAAGAGAAGAACAAGATCCGGGAAGACGTAAACCTATGGCGATGTGGCTACTGCAAGAAGACCCTATACGAAGAAAAAGAACTCGACAAGCATCTTGATG AATGGCACTTCGATGTTCTAGATATGGGTCCCGGCAGGTGCTTGGCAGATTCGTGTGGCGCATTACATTGTGACCTTGTGATGGATTCACCGCGCAAAAC CAAGTGCAATCCAGCAGCTGCTGCAAGAAATAAGCATCTGTGTGAGAGTTTGGCTGATCGTTGCTTTCCGGTCAATGAGGGTTCCTCAGCTCGTCGTCTT AATGACCTTTTCTTACGGCAGTTTTGTGATGCCCACACTTGCAAGGGAGACCGGAAACCCTTCTCAAGAGGCGGCAAGGTATACTTACCTCCTCAACTAA TTTTCTTCGAGTGCTACGAGTTTCCTTCTATTATGAGAAGTACAGTTCAGTTTCCACTCTTAAGTCTCTAA
AA sequence Show only first row Show all	>Lus10014570 pacid=23170926 polypeptide=Lus10014570 locus=Lus10014570.g ID=Lus10014570.BGIv1.0 annot-version=v1.0 MAIFAPRFCILFIFLCIAISLQSKNCHSFSAAVLQGNQGSSVPRTLDEEKGNAHEVHCSRERSRAAWKIVEQYLMPFVEKEKHSISKKCPLHPENDLYRL QEKNKIREDVNLWRCGYCKKTLYEEKELDKHLDEWHFDVLDMGPGRCLADSCGALHCDLVMDSPRKTKCNPAAAARNKHLCESLADRCFPVNEGSSARRL NDLFLRQFCDAHTCKGDRKPFSRGGKVYLPPQLIFFECYEFPSIMRSTVQFPLLSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014570 [exp]	0	1
AT5G61250		ATGUS1	glucuronidase 1 (.1.2)		Lus10036962 [exp]	1.7	0.8374
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10043053 [exp]	4.9	0.8285
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10004650 [exp]	7.1	0.8318
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10016092 [exp]	8.3	0.8302
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10011149 [exp]	12.2	0.8182
AT3G53540			unknown protein		Lus10024434 [exp]	15.3	0.7734
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	17.7	0.7972
AT1G52530			unknown protein		Lus10003678 [exp]	21.0	0.7835
AT2G19690		PLA2-BETA	phospholipase A2-beta (.1.2)		Lus10028189 [exp]	22.6	0.7615
AT3G12110		ACT11	actin-11 (.1)		Lus10040826 [exp]	23.5	0.8254

Compare expression of checked genes

Lus10014570 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.