Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01710 84 / 4e-17 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G27350 56 / 1e-08 unknown protein AT5G40700 54 / 6e-08 unknown protein AT2G35880 55 / 9e-08 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G26050 54 / 2e-07 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 51 / 1e-06 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G25480 50 / 3e-06 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 49 / 5e-06 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT1G24160 47 / 3e-05 unknown protein AT1G70100 45 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032115 [exp] 718 / 0 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10037054 [exp] 54 / 2e-07 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 54 / 3e-07 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 53 / 4e-07 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002915 [exp] 52 / 8e-07 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029213 [exp] 49 / 4e-06 AT1G24160 135 / 2e-36 unknown protein Lus10010725 [exp] 49 / 7e-06 AT1G70100 213 / 2e-62 unknown protein Lus10002012 [exp] 47 / 2e-05 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 47 / 3e-05 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G336300 [exp] 267 / 7e-83 AT3G27350 124 / 1e-31 unknown protein Potri.006G254400 [exp] 55 / 9e-08 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 53 / 5e-07 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 53 / 5e-07 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.018G027500 [exp] 52 / 5e-07 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.010G113000 [exp] 52 / 8e-07 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 51 / 2e-06 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G192800 [exp] 51 / 2e-06 AT1G70100 197 / 6e-57 unknown protein Potri.010G038100 [exp] 49 / 5e-06 AT1G70100 196 / 4e-56 unknown protein Potri.008G129300 [exp] 49 / 7e-06 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10014571 pacid=23170907 polypeptide=Lus10014571 locus=Lus10014571.g ID=Lus10014571.BGIv1.0 annot-version=v1.0 ATGGGGGAAACTGCTACTTGTCTCATCCCCCACCACCACCACAACCAACAACTCTTCTCTTACGCCGCAGGCATTTCTAACGACCCCAAACAGCTCTCTT CTTCTTCCTCGATCAGCTCACTTTCAGGGGGGCAATCCGTTTCGTTTGGGAGGTTTACGTCGGAGTCACTGTCTTGGGAGAAATGGTCTTCTTTCTCCTC TAGCAACAAATATGTTGAGGAAGCTGAGAAATTCTCCCGACCTGGATCTGTTGCTGAGAAGAAGGCTTTCTTTGAGGCTCATTACAGAGATCTTGCTGCA AAAAAGGCGGCTGCTGCTGCTGCTGCCAAAGCAGCAGAAGAGGCGACTGCTGCTGCTACTGCTGTTGCGGAAACAAATTGTGTGGAATCCGAACCCAATA AGGACGATGATGAGTCAAACTCTCCACCGGAAGAGCAAGTTGTTGAGTTTAGTTGCGTAAAGGTGGAAGCTTTGTGCCAGGTTGATGAAGCTGTTGATAG CAAGGTTGAAGAAGGTGGTACTAAAAATGCTGAGAAATCTGTTCAGAAACAAATGGAAAAGCCATTGTTGAAGGATTTCATGGCTAACGATTCAGACTCC GCAATGATGATGAAAAAGCCTTCAGTTTCTTTCTCAAGGACTCTGGTTATCGGTAAGGCAACAGCATCATCATCATCATCCAAAGTTGCAGCTTTTTCAT CGCCCGCGGCGAAACGCCCTGTAGCTGCTACTCCGATGAGCAAGAGATTGACGCCGAAATCAACTCACAGCTGCAACAAGGCATCAATGAACTTCACTCC AGTGAGGGAAATCAACAGACTAACTTCCACCATCATCAGGAAGATCGATGGTTGCTCTAGAGCTTCTTATAAGGCTGCTAAGGATTTCTCCTCAATTACC CCTCTAAGAACTCCAACTGTGGCATGTAGAACAGACGAATCCAGGCATCCGCAAATGACTCCTCAGTCCGAAACCTGGAGGGCAAGAACACCTCTTCATC CATCGTCCGCAACTACTGAAAGCAAGCCAGTTAGGCCAAGGTGGCATTTCCTCCCTACAGACTGCTCTAAGTTCATGAGTGGCAGCAGAAACAAATCCCA GGATTCACCAAGCTTTACCACACCTTTCAGAACAGAAGAAAGAGCTGCAAGGCGGAAAAAGAAGCTGGAAGAGAAGTTCAATGCTAAACAAGAACAAAAG GTTCAGTTACAAGCAACAATCATAGAGAAGGCAGAAACAGAAATTAAAAAGTTCCGGCAGAGCCTTTGCTTCAAGGCCAGGCCATTACCAGGCTTTTATA AGCAAAGAGTAACACCCAAGAACCAACTTCACAAGGTTCCATCGACAGATTCTCCACCGTCAGAACCGGAGATTCAGGACCCTGCAATGGTGAAGATTAC TACTCCACATATGATTGAGAGAACTTCAAGCAAGAACAGTGGCAGAAATGTGAAGAAGACCGAAAACAACAACAATCCGAGGTCTCTACGTGCAAGGTTG AATGCAACTGCCACTGAGAATAATACTGCTTATCGTCAGCAAACATCCAAAACTGCAAGTTGA
AA sequence Show only first row Show all	>Lus10014571 pacid=23170907 polypeptide=Lus10014571 locus=Lus10014571.g ID=Lus10014571.BGIv1.0 annot-version=v1.0 MGETATCLIPHHHHNQQLFSYAAGISNDPKQLSSSSSISSLSGGQSVSFGRFTSESLSWEKWSSFSSSNKYVEEAEKFSRPGSVAEKKAFFEAHYRDLAA KKAAAAAAAKAAEEATAAATAVAETNCVESEPNKDDDESNSPPEEQVVEFSCVKVEALCQVDEAVDSKVEEGGTKNAEKSVQKQMEKPLLKDFMANDSDS AMMMKKPSVSFSRTLVIGKATASSSSSKVAAFSSPAAKRPVAATPMSKRLTPKSTHSCNKASMNFTPVREINRLTSTIIRKIDGCSRASYKAAKDFSSIT PLRTPTVACRTDESRHPQMTPQSETWRARTPLHPSSATTESKPVRPRWHFLPTDCSKFMSGSRNKSQDSPSFTTPFRTEERAARRKKKLEEKFNAKQEQK VQLQATIIEKAETEIKKFRQSLCFKARPLPGFYKQRVTPKNQLHKVPSTDSPPSEPEIQDPAMVKITTPHMIERTSSKNSGRNVKKTENNNNPRSLRARL NATATENNTAYRQQTSKTAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01710			TPX2 (targeting protein for Xk...		Lus10014571 [exp]	0	1
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Lus10033979 [exp]	4.0	0.9625
AT3G23890		ATTOPII, TOPII	topoisomerase II (.1.2)		Lus10019720 [exp]	4.6	0.9629
AT3G01710			TPX2 (targeting protein for Xk...		Lus10032115 [exp]	4.9	0.9529
AT1G69770		CMT3	chromomethylase 3 (.1)		Lus10026024 [exp]	6.5	0.9607
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Lus10035296 [exp]	6.9	0.9606
AT5G04320			Shugoshin C terminus (.1.2)		Lus10021420 [exp]	8.4	0.9519
AT3G52110			unknown protein		Lus10039611 [exp]	8.8	0.9542
AT3G10310			P-loop nucleoside triphosphate...		Lus10035442 [exp]	12.0	0.9442
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Lus10017715 [exp]	13.0	0.9567
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10011936 [exp]	13.4	0.9452

Compare expression of checked genes

Lus10014571 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.