Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40670 397 / 3e-141 PQ-loop repeat family protein / transmembrane family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032114 [exp] 420 / 2e-150 AT5G40670 329 / 5e-115 PQ-loop repeat family protein / transmembrane family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070300 [exp] 414 / 1e-147 AT5G40670 412 / 7e-147 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.017G070401 [exp] 86 / 1e-21 AT5G40670 99 / 4e-27 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.016G023400 [exp] 42 / 0.0004 AT2G41050 396 / 1e-136 PQ-loop repeat family protein / transmembrane family protein (.1) Potri.007G031800 [exp] 40 / 0.001 AT4G36850 507 / 0.0 PQ-loop repeat family protein / transmembrane family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF04193 [flax] [poplar] PQ-loop PQ loop repeat
Representative CDS sequence Show only first row Show all	>Lus10014572 pacid=23170917 polypeptide=Lus10014572 locus=Lus10014572.g ID=Lus10014572.BGIv1.0 annot-version=v1.0 ATGGCTTCGTGGAATTCGATTCCCCTGGAAATAACGTACCAGACACTGGGTTGGCTGGCTTTCGTCGCATGGTCCATCAGTTTCTACCCTCAGGTCATCA TGAATTTCCGCCGCAAGAGTGTGGTGGGACTGAGCTTGGATTTCTTGCTGTTGAATGTCACGAAGCACTCTTCCTATCTGATTTACAACGCTGTACTCTA CTTCAGTCCTGCTGTCCAGCAGCAGTACTTTCAAAAGTATGGCTATGACCAGATGATACCGGTTGCTGCAAATGATGTTGCTTTCTCAATACACGCAGTT GTATTGACACTGATCACGCTGTTCCAAGTTTTTATCTATGAACGTGGAACTCAGAAGATCTCCAGGATCTCTATCGGAATTGTTAGTGTTGTATGGCTAA TTGCTGCAGCTTGTTTCTTTGTTGCTTTACCAAGTCATTCTTGGCTATGGCTCATCTCCATCTTTAACTCGATTCAAGTCTTCATGACTGTCATCAAGTA TATTCCACAGGTGGTAATGAACTTCATTCGTAAAAGCACCGAGGGATTCAGCATTGGCAACATTTTGCTTGATTTCACCGGTGGTGTTGCCAATTATGCA CAAATGGCCGTACTTTCTATCGACCAAAATTCTTGGGTGAATTTCTATGGCAACATAGGGAAGACACTACTCTCTTTGGTTTCGGTATTCTTCGACATTC TATTCATGGTGCAGCATTACATCGTGTATCGAGCGAAGGAGACCAGCGACGCTCCTGGGAAGGCGAACAGTGATCCGCTTATCGAATCTTCAGTTGAAGA GCCGCAGACTGGAAGTCTTGTTTGA
AA sequence Show only first row Show all	>Lus10014572 pacid=23170917 polypeptide=Lus10014572 locus=Lus10014572.g ID=Lus10014572.BGIv1.0 annot-version=v1.0 MASWNSIPLEITYQTLGWLAFVAWSISFYPQVIMNFRRKSVVGLSLDFLLLNVTKHSSYLIYNAVLYFSPAVQQQYFQKYGYDQMIPVAANDVAFSIHAV VLTLITLFQVFIYERGTQKISRISIGIVSVVWLIAAACFFVALPSHSWLWLISIFNSIQVFMTVIKYIPQVVMNFIRKSTEGFSIGNILLDFTGGVANYA QMAVLSIDQNSWVNFYGNIGKTLLSLVSVFFDILFMVQHYIVYRAKETSDAPGKANSDPLIESSVEEPQTGSLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40670			PQ-loop repeat family protein ...		Lus10014572 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10006864 [exp]	3.9	0.9114
AT5G25540		CID6	CTC-interacting domain 6 (.1)		Lus10021960 [exp]	4.2	0.8717
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10037601 [exp]	4.7	0.9010
AT5G35690			unknown protein		Lus10000922 [exp]	8.0	0.8718
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10008447 [exp]	9.9	0.8511
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10022447 [exp]	16.6	0.8966
AT2G23520			Pyridoxal phosphate (PLP)-depe...		Lus10016752 [exp]	26.8	0.8663
AT4G26060			Ribosomal protein L18ae family...		Lus10011943 [exp]	33.0	0.8840
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Lus10024192 [exp]	52.4	0.8525
AT1G01490			Heavy metal transport/detoxifi...		Lus10007911 [exp]	60.6	0.8490

Compare expression of checked genes

Lus10014572 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.