Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40650 469 / 4e-169 SDH2-2 succinate dehydrogenase 2-2 (.1) AT3G27380 456 / 1e-163 SDH2-1 succinate dehydrogenase 2-1 (.1.2) AT5G65165 323 / 6e-111 SDH2-3 succinate dehydrogenase 2-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032113 [exp] 582 / 0 AT5G40650 467 / 3e-168 succinate dehydrogenase 2-2 (.1) Lus10022319 [exp] 528 / 0 AT5G40650 469 / 5e-169 succinate dehydrogenase 2-2 (.1) Lus10014879 [exp] 525 / 0 AT5G40650 467 / 2e-168 succinate dehydrogenase 2-2 (.1) Lus10028289 [exp] 324 / 4e-111 AT5G65165 435 / 1e-154 succinate dehydrogenase 2-3 (.1) Lus10040198 [exp] 296 / 2e-100 AT5G65165 391 / 1e-137 succinate dehydrogenase 2-3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G338400 [exp] 457 / 3e-164 AT5G40650 444 / 4e-159 succinate dehydrogenase 2-2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014573 pacid=23170863 polypeptide=Lus10014573 locus=Lus10014573.g ID=Lus10014573.BGIv1.0 annot-version=v1.0 ATGGCGGCCAGTTTACTGAGACGCGGCGTTTCTCTAGCGAGGACGACTCCATCTCAGATGGCGGCAAGGTTCGTTTCCGCCAGGCCTCACGCGTCGGAGG CGGAGGCGCAGAAGAACGAAACGACGGCGGCGCAGTCCTCCGGCTCCGACGTCAAGGTCTTCCAAATCTACCGATGGAGCCCTGACAATCCGTCCAAGCC GGAGCTCCAGGACTACAAGATCGACCTAAAGCAGTGCGGGCCCATGGTTCTGGACGCTCTGATCAAGATCAAGAACGAGATGGATCCGTCGCTCACCTTC CGAAGATCCTGCCGCGAAGGCATCTGCGGTTCGTGCGCGATGAACATCGACGGCTGCAACGGCCTCGCGTGCCTGACAAAGATCTCCTCAGGCAAGCCTA CGATGATCACGCCTCTGCCTCACATGTTCGTGATTAAGGATCTGGTCGTCGACATGACCAATTTCTACAATCAGTATAAGAGCATTGAGCCGTGGCTGAA GCGTAAGAACCCTCCTGAGGTTGCCGGGAAGGAGATTCTGCAGAGCAAAAAGGATAGGTCGAAGCTGGATGGGATGTATGAGTGCATTTTGTGCGCTTGC TGTAGCACTTCGTGTCCCAGCTATTGGTGGAATCCTGAGGCTTACTTGGGCCCTGCTGCTCTGCTTCATGCTAACAGATGGATCAGTGACAGCCGTGATG AATACACGAAGGAGCGACTGGATGCGGTAAACGATGAGTTTAAGCTGTACAGGTGCCATACTATCTTGAACTGTGCTCGTGCCTGCCCGAAAGGGTTAAA CCCTGGAAAGCAGATTCAGAATATTAAGGGTCTTCAGATCAGCGGTGCTGCCTGA
AA sequence Show only first row Show all	>Lus10014573 pacid=23170863 polypeptide=Lus10014573 locus=Lus10014573.g ID=Lus10014573.BGIv1.0 annot-version=v1.0 MAASLLRRGVSLARTTPSQMAARFVSARPHASEAEAQKNETTAAQSSGSDVKVFQIYRWSPDNPSKPELQDYKIDLKQCGPMVLDALIKIKNEMDPSLTF RRSCREGICGSCAMNIDGCNGLACLTKISSGKPTMITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPEVAGKEILQSKKDRSKLDGMYECILCAC CSTSCPSYWWNPEAYLGPAALLHANRWISDSRDEYTKERLDAVNDEFKLYRCHTILNCARACPKGLNPGKQIQNIKGLQISGAA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10014573 [exp]	0	1
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10014433 [exp]	1.4	0.8439
AT3G46290		HERK1	hercules receptor kinase 1 (.1...		Lus10028140 [exp]	3.5	0.8289
AT3G03210			unknown protein		Lus10010965 [exp]	9.1	0.8334
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	9.6	0.8225
AT4G09810			Nucleotide-sugar transporter f...		Lus10005790 [exp]	9.9	0.8005
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10031436 [exp]	11.2	0.7855
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10021441 [exp]	15.0	0.8080
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10038277 [exp]	16.7	0.7480
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Lus10006632 [exp]	19.4	0.7703
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	19.7	0.7813

Compare expression of checked genes

Lus10014573 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.