Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46610 624 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G14350 125 / 2e-32 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 125 / 1e-29 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G18940 122 / 3e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 120 / 4e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63400 119 / 7e-28 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 119 / 1e-27 RPF2 rna processing factor 2 (.1) AT1G63080 119 / 1e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 118 / 3e-27 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 114 / 5e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032109 [exp] 1320 / 0 AT3G46610 665 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10002107 [exp] 129 / 1e-30 AT5G02860 1040 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013894 [exp] 128 / 4e-30 AT5G02860 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 126 / 1e-29 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013283 [exp] 125 / 1e-29 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10042529 [exp] 121 / 9e-28 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000554 [exp] 116 / 9e-27 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10021989 [exp] 115 / 7e-26 AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 112 / 5e-25 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G070800 [exp] 666 / 0 AT3G46610 780 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.015G105400 [exp] 141 / 4e-34 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 127 / 4e-30 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050400 [exp] 126 / 5e-30 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 124 / 3e-29 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.001G276500 [exp] 123 / 1e-28 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G271400 [exp] 122 / 1e-28 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 119 / 1e-27 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G034300 [exp] 117 / 1e-27 AT1G62930 397 / 4e-133 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046100 [exp] 118 / 2e-27 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10014577 pacid=23170864 polypeptide=Lus10014577 locus=Lus10014577.g ID=Lus10014577.BGIv1.0 annot-version=v1.0 ATGCAATCTTTGACTGTCTGCCCTCCAAATTCCTGCGTATGGACACTTCCCCAAGTAGATTTTCACTTGGGTTCCTCCCGTTCTAGCTATAGAAGGAAAA GAGGATTCGTTGCTGCTGCTGTTTCGTTGCTTCGTAGCTCACATTCTGGTCATTTTCTGGTTTGTAGTGGTTTAACGTATGGTAGAAGAATTGAGGGTTG TGATATGCTTTTGTTCAGAAATGCTAAGCTAGGGTTTAGCATTTTTGTTGAGCAAAAGGAGAGTTTTAGTTTGCAAGTGGCATTGGCAGCATCATCATGT GCATTGGAGCAACAAGAGACACAGAATCTGGTTCATGAGAAATTTGAAATAGCGGATGGCTCTAATGGGACTACTAGTAACGGCATGCAAACTCGCATGG TTGCGAGGGTGGATGTTCGGCGGCTAGCTAAGCTTTTACATTCAGCTGCAACTGCAGATGACGTAGAGGAGATTCTCAAGGGTAAAGAGTTATATCCAAT TAAAGTGTACTCAACTTGCATCAAGAGTTGTGGTTGGGAGAAGAAAATGAAGGCTGCATTTGCCATTGTCTATTGGCTCGAGCGAAAGAAAGAGCAAACC GGTGCTGCTGTCGGTCCGAACATTTTCATATATAACCATCTCTTGAATGTGGTGAAGGAATGTAAGGAATTCAAAGAAACAGATCGAATTTTGAACGAGA TGGCTCGGCAAGGGATTCATCCCAATGTTGTGACTTACAACATTTTGATGGTTATCCATGTGGAGCAGGACCAACCCTCTAAAGCTCTCCATGTGCTTGA GGAAATTCGACAGAAAGGTCTCAAACCGTCTTCTGCAACCTATGCAACTGCTATGACCGCTTGTCGAAAATTGGAAGATGGATTCGGATTGTTGAGGATT TTCAGGGAGGTTACGGAGAGGCATCTAATTAATGGCGATTTAGCCAGTGTCGACGAAGACGGTAATTGTCTGGAGCAGTTTCTTATGCTTAAGGACTACA CGCTTCGGATTTGCTACCAGGTGATGAGAGTATGGCTAGCAAGGAGTCCTGATCAAAACATGAGCAAGAATGTGCTTCAACTTTTGACCGAGATGGATAG TGCTCGACTCCGACCGACTCGAGCTGAGTATGAAAAGCTCATCTGGGCGTGTACACGCGAAGATCATTACGCGGTTGGCAAAGAGCTTTACACTAGAATA AGAGCAAGATTCAATTGGATACCTTTGTCTGTGTGCAACCACTTGATTTGGCTGATGGGAACGGCTAAAAAATGGTGGGCGGCTCTCGAAATCTACGAGG ATTTGTTATCAAAGGGGCCGAAACCAAACAACGTTTCCTCCGAATTGGTCGTTTCTCACTTTGAAATCCTCTTGGCAGCTGCCAAAAGAAGAGGGATCTG GACATGGGGTGTTAGGTTGTTGAACACAATGGAGGATAAGGGACTTAAACCGGATTCTAGGCATTGGAATGCAGTTATTGTTGCCTGTGCCAAGGCTGCA GAAGCTTCTGCTGCAGTGGAGATATTCAAGAGAATGGTCGAGCAAGGCGAGAAGCCGACGATACTCTCGTACGGTGGCCTTCTCAGCAGCTTCGAGAAGG CCGGACTTTACGAAGAAGGATTTCGTGTTTGGAATCATATGGTTAGGATGGAAGTCAGACCAAACTTGCACGCTTATACTACTTTTGCTTCTATCTTGAC TGCGCTAGGGAAGTTCGACATGGTCAATGCTTTGATCAGGGAGATGGTTTGTAACGGTATCGAACCGACGGTGTTCACGTACAACGCCGTGATAAGTGGG TGTGCGCGTCGTAGCATGAGCCACACGGCGTACGAGTGGTTCCATCGTATGCAGTGTGATGGCATTTGTCCGAACGAGATATCGTACGAGATGCTGATTG AGGCACTTGTGAAGGATGGGAAGCCGAGGCATGCGTATGAGGTGTACTCAAAGGGTCGAAACGAGGAGGGGCTCGCTCTTTCGTCGAAGGCGTATGATGC GGTTGTCGATGCTAGCTGTGAGTCGAGAGACGTTGTTGATATAAGCTTGTTGGGGCCTCGGCCACCGGATAGAGTAAGAGGTAGAGGAGCAAAGGTGAGG AGAACATGGAGGAGAGGAAGCAAGCCGTTTGATAGGAATGAAATCTACCATAGACGGCTAGGGGGTGACAATATGTGTAATGAGTTGAAGAATGACGTAG AAGTAGGAGAGAAGGGTAATGGACAAGAGGATAAAGCAACTTTCGCCCCTAACGAACCCATTAAACGTGGCATACGATTCAGTCACCTAGTTACTGTAAT CACTCTACCGGGTCATACTGGTCTTTCCTCTGCTTATTTTGGAGCTGTGAAATCTGGTCGTTCTTCTTCTTCATCTTCATTTGGAGCTGTGAAATGCTCA ATTGCTGGGAAATCTGGTGGACTTTCTTCTTCATCTTCCTTTGGAGCTGTTAAATCCTTCGTTTCTGTGGAGCTGGAAAATCGTCATGTTCTAAAACCAT GA
AA sequence Show only first row Show all	>Lus10014577 pacid=23170864 polypeptide=Lus10014577 locus=Lus10014577.g ID=Lus10014577.BGIv1.0 annot-version=v1.0 MQSLTVCPPNSCVWTLPQVDFHLGSSRSSYRRKRGFVAAAVSLLRSSHSGHFLVCSGLTYGRRIEGCDMLLFRNAKLGFSIFVEQKESFSLQVALAASSC ALEQQETQNLVHEKFEIADGSNGTTSNGMQTRMVARVDVRRLAKLLHSAATADDVEEILKGKELYPIKVYSTCIKSCGWEKKMKAAFAIVYWLERKKEQT GAAVGPNIFIYNHLLNVVKECKEFKETDRILNEMARQGIHPNVVTYNILMVIHVEQDQPSKALHVLEEIRQKGLKPSSATYATAMTACRKLEDGFGLLRI FREVTERHLINGDLASVDEDGNCLEQFLMLKDYTLRICYQVMRVWLARSPDQNMSKNVLQLLTEMDSARLRPTRAEYEKLIWACTREDHYAVGKELYTRI RARFNWIPLSVCNHLIWLMGTAKKWWAALEIYEDLLSKGPKPNNVSSELVVSHFEILLAAAKRRGIWTWGVRLLNTMEDKGLKPDSRHWNAVIVACAKAA EASAAVEIFKRMVEQGEKPTILSYGGLLSSFEKAGLYEEGFRVWNHMVRMEVRPNLHAYTTFASILTALGKFDMVNALIREMVCNGIEPTVFTYNAVISG CARRSMSHTAYEWFHRMQCDGICPNEISYEMLIEALVKDGKPRHAYEVYSKGRNEEGLALSSKAYDAVVDASCESRDVVDISLLGPRPPDRVRGRGAKVR RTWRRGSKPFDRNEIYHRRLGGDNMCNELKNDVEVGEKGNGQEDKATFAPNEPIKRGIRFSHLVTVITLPGHTGLSSAYFGAVKSGRSSSSSSFGAVKCS IAGKSGGLSSSSSFGAVKSFVSVELENRHVLKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	0	1
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10032109 [exp]	1.4	0.9606
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10043079 [exp]	2.2	0.9668
AT2G31400		GUN1	genomes uncoupled 1 (.1)		Lus10022290 [exp]	3.9	0.9256
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031791 [exp]	3.9	0.9536
AT4G39620		ATPPR5, EMB2453	EMBRYO DEFECTIVE 2453, A. THAL...		Lus10035850 [exp]	4.2	0.9519
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	4.2	0.9331
AT5G03800		EMB166, EMB175,...	embryo defective 1899, EMBRYO ...		Lus10035587 [exp]	4.4	0.9215
AT1G09900			Pentatricopeptide repeat (PPR-...		Lus10015110 [exp]	5.2	0.9540
AT3G14930		HEME1	Uroporphyrinogen decarboxylase...		Lus10011170 [exp]	5.7	0.9538
AT5G04590		SIR	sulfite reductase (.1)		Lus10027360 [exp]	8.4	0.9385

Compare expression of checked genes

Lus10014577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.