Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48670 172 / 5e-52 MADS FEM111, AGL80 AGAMOUS-like 80 (.1) AT3G05860 139 / 1e-40 MADS MADS-box transcription factor family protein (.1.2.3) AT1G65300 132 / 4e-37 MADS AGL38, PHE2 PHERES2, AGAMOUS-like 38 (.1) AT5G26650 131 / 4e-36 MADS AGL36 AGAMOUS-like 36 (.1) AT5G26630 128 / 4e-36 MADS MADS-box transcription factor family protein (.1) AT1G65330 127 / 4e-35 MADS AGL37, PHE1 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) AT5G27960 127 / 1e-34 MADS AGL90 AGAMOUS-like 90 (.1) AT5G27810 118 / 1e-33 MADS MADS-box transcription factor family protein (.1) AT1G31640 121 / 1e-31 MADS AGL92 AGAMOUS-like 92 (.1) AT1G31630 118 / 3e-31 MADS AGL86 AGAMOUS-like 86 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032108 [exp] 393 / 4e-139 AT5G48670 180 / 9e-55 AGAMOUS-like 80 (.1) Lus10014883 [exp] 197 / 2e-62 AT5G48670 114 / 1e-29 AGAMOUS-like 80 (.1) Lus10022316 [exp] 195 / 1e-61 AT5G48670 131 / 2e-36 AGAMOUS-like 80 (.1) Lus10022325 [exp] 184 / 1e-57 AT1G65300 113 / 1e-30 PHERES2, AGAMOUS-like 38 (.1) Lus10007711 [exp] 128 / 2e-37 AT5G48670 83 / 5e-20 AGAMOUS-like 80 (.1) Lus10007713 [exp] 114 / 4e-32 AT1G65330 74 / 1e-16 PHERES1, AGAMOUS-like 37, MADS-box transcription factor family protein (.1) Lus10029367 [exp] 96 / 2e-23 AT5G06500 88 / 1e-20 AGAMOUS-like 96 (.1) Lus10016180 [exp] 96 / 2e-23 AT5G26650 84 / 5e-19 AGAMOUS-like 36 (.1) Lus10000974 [exp] 90 / 8e-22 AT5G26650 93 / 3e-24 AGAMOUS-like 36 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002400 [exp] 219 / 7e-71 AT5G48670 222 / 4e-71 AGAMOUS-like 80 (.1) Potri.013G018100 [exp] 197 / 4e-63 AT5G48670 187 / 1e-58 AGAMOUS-like 80 (.1) Potri.013G001700 [exp] 185 / 5e-58 AT5G48670 203 / 3e-64 AGAMOUS-like 80 (.1) Potri.006G201700 [exp] 128 / 5e-34 AT5G48670 120 / 2e-30 AGAMOUS-like 80 (.1) Potri.016G068132 [exp] 121 / 1e-33 AT5G48670 125 / 1e-34 AGAMOUS-like 80 (.1) Potri.013G107600 [exp] 109 / 1e-29 AT1G22590 117 / 9e-34 AGAMOUS-like 87 (.1.2) Potri.012G109900 [exp] 78 / 2e-16 AT5G55690 112 / 2e-28 MADS-box transcription factor family protein (.1) Potri.002G255700 [exp] 77 / 4e-16 AT5G55690 112 / 3e-28 MADS-box transcription factor family protein (.1) Potri.001G214900 [exp] 72 / 3e-14 AT5G55690 94 / 4e-22 MADS-box transcription factor family protein (.1) Potri.001G329800 [exp] 68 / 7e-13 AT5G55690 64 / 2e-11 MADS-box transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10014578 pacid=23170950 polypeptide=Lus10014578 locus=Lus10014578.g ID=Lus10014578.BGIv1.0 annot-version=v1.0 ATGACTAGGAAGAAAGTGAAGTTGGCCTACATAGCAAACGACTCGGCGAGAAAAGCCACGTACAAGAAGAGGAAGAAGGGCCTGATGAAGAAGGTGAGCG AGTTGAGCACCCTGTGCGACATCCAGGCGTGTGCTATTGTGTACAGTCCGTACGATACGCAGCCGGAGACGTGGCCACCGACGGCAGCCGGGGTCCACCA GGTGCTGTCGAGGTTCAGGAAGGTGCCCCAAATGGAGCAGTGCAAAAAGATGGTCAACCAGGAGAAGTTCCTCGAGGAGCGGATCAAGAAGGCGGCAGAG CAGCTCCGGAAGCAGAAGCGAGACAACGACGAGAAGATGGTGCAAAACGCCCTCTTCGAGTGCCTCACTGGGAGGATCTCGCTCCAGAGCTTGACCCTCG GGGACCTTGACGTAATTGCCAGGGCCGTTGACCAGCAGATCAAGGAAGTTGACCGGAGGCTGGCTGAGATAGCAAGGAAAGGCGGCAGGGGAGGAGGTGG TGGTGCCGGTGGGTCCGCCGCCACCAATGGGGTCAATAATCTCAGTCTGGAGGGGTCGTTGCAAATGATGACGCCGGCAAACGGTGGTGGGATGGTGGGG GCCGCCAAGGAGGAGTTCGTTGAGAATGTTAATCATGAGAATCTTCAGAGGCAGTTGTGGTTCATGGAGATGATGAATAGTAATGCTCCGGCTCCGTTGA CGGCGGTGGAGCAGCAGCAGATGGGGTTTATGGGGGGAGAGATGATGATGAATAATGTGGCGGCGGATGATGTTGTACATAATTAG
AA sequence Show only first row Show all	>Lus10014578 pacid=23170950 polypeptide=Lus10014578 locus=Lus10014578.g ID=Lus10014578.BGIv1.0 annot-version=v1.0 MTRKKVKLAYIANDSARKATYKKRKKGLMKKVSELSTLCDIQACAIVYSPYDTQPETWPPTAAGVHQVLSRFRKVPQMEQCKKMVNQEKFLEERIKKAAE QLRKQKRDNDEKMVQNALFECLTGRISLQSLTLGDLDVIARAVDQQIKEVDRRLAEIARKGGRGGGGGAGGSAATNGVNNLSLEGSLQMMTPANGGGMVG AAKEEFVENVNHENLQRQLWFMEMMNSNAPAPLTAVEQQQMGFMGGEMMMNNVAADDVVHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48670	MADS	FEM111, AGL80	AGAMOUS-like 80 (.1)		Lus10014578 [exp]	0	1

Compare expression of checked genes

Lus10014578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.