Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 515 / 0 ATERDJ3B DNAJ heat shock family protein (.1) AT3G08910 175 / 5e-52 DNAJ heat shock family protein (.1) AT5G01390 175 / 6e-52 DNAJ heat shock family protein (.1.2.3.4) AT1G10350 169 / 2e-49 DNAJ heat shock family protein (.1) AT2G20560 168 / 2e-49 DNAJ heat shock family protein (.1) AT5G25530 165 / 7e-48 DNAJ heat shock family protein (.1) AT1G59725 161 / 1e-46 DNAJ heat shock family protein (.1) AT5G22060 162 / 3e-46 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT4G28480 154 / 1e-44 DNAJ heat shock family protein (.1.2) AT3G44110 146 / 2e-40 ATJ3 DNAJ homologue 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032100 [exp] 659 / 0 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 612 / 0 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 606 / 0 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 170 / 5e-50 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 169 / 1e-49 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10013981 [exp] 166 / 4e-48 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10017687 [exp] 162 / 1e-46 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10041254 [exp] 155 / 3e-44 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 154 / 4e-44 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198000 [exp] 560 / 0 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.014G122600 [exp] 558 / 0 AT3G62600 565 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 174 / 8e-51 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 168 / 2e-48 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.010G243100 [exp] 168 / 2e-48 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 167 / 3e-48 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.007G136700 [exp] 166 / 3e-48 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 164 / 8e-48 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 159 / 4e-46 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 159 / 7e-46 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain CL0392 [flax] [poplar] PF01556 [flax] [poplar] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Lus10014584 pacid=23170954 polypeptide=Lus10014584 locus=Lus10014584.g ID=Lus10014584.BGIv1.0 annot-version=v1.0 ATGGCGCACCGAGGAGCGAATCTCTTCTTCTTACTATGCGCTCTATCGCACTACGCTCTCATCTCCATTGCCGGTAAGAGCTATTACGATGTATTGCAAG TGGCGAAAGGTGCATCGGACGATCAGATCAAGCGAGCTTACAGGAAGCTGGCATTGAAGTATCATCCCGATAAGAACCAAGGGAATGAGGAAGCTAATAA GCGCTTCGCCGAGATCAGCAACGCGTATGAGGTTTTGTCCGATGGCGAGAAGAGGAAGATATACGATGCTTATGGAGAGGAAGGGCTTAGGCAGCATTCG GCTGGTGGAGGTGGCGGTGGAGGAATGAACATTCAAAACATTTTTGAACAATTCTTTGGTGGACGAGGCCATTCCGAAGAGGAGGAAGAGAGGATACCCA AAGGCGATGATGTCATTGTCGATTTGGATGCAACGCTGGAGGATTTATACATGGGTGGTTCAGTTAATGTATGGAGAGAAAAGAATGTTATAAAGCCAGC CCCAGGAAAAAGACGCTGTAACTGCAGAAATGAGATGTATCATAGGCAAATTGGTCCAGGGATGTTCCAGCAGATGACAGAGCAGGTCTGTGATAAATGC CAAAATGTCAAGTTTGAAAGGGAAGGTTATTCTCTCGCAATTGATATCGAGAAAGGAATGGAAGATGGACAAGAGGTAGTTTTCTACGAAGATGGTGAGC CCAAGATTGATGGGGAACCGGGAGACTTGAAGTTCCGGATTCGCACATCACCACATGACGTTTTCACAAGGAAAGGCAATGACTTACACACTACAGTGAC CATTACCTTGGTCCAAGCGCTGGTTGGTTTCAGGAAGAAATTTAAACACCTTGATGAGCATCTAGTTGACATTAGCACCCAGGTAATCACTAAGCCGAAA GAAGTGAGGATGTTCAAGGGCGAAGGGATGCCATTTTACGCGAGCACGAAGAAAGGAGACCTTTACGTCACATTTGAGGTTCTCTTCCCAAGCTCATTGA CAGAGGAACAGAAATCAAAGATTAAGCAAGTTCTTGGCTAG
AA sequence Show only first row Show all	>Lus10014584 pacid=23170954 polypeptide=Lus10014584 locus=Lus10014584.g ID=Lus10014584.BGIv1.0 annot-version=v1.0 MAHRGANLFFLLCALSHYALISIAGKSYYDVLQVAKGASDDQIKRAYRKLALKYHPDKNQGNEEANKRFAEISNAYEVLSDGEKRKIYDAYGEEGLRQHS AGGGGGGGMNIQNIFEQFFGGRGHSEEEEERIPKGDDVIVDLDATLEDLYMGGSVNVWREKNVIKPAPGKRRCNCRNEMYHRQIGPGMFQQMTEQVCDKC QNVKFEREGYSLAIDIEKGMEDGQEVVFYEDGEPKIDGEPGDLKFRIRTSPHDVFTRKGNDLHTTVTITLVQALVGFRKKFKHLDEHLVDISTQVITKPK EVRMFKGEGMPFYASTKKGDLYVTFEVLFPSSLTEEQKSKIKQVLG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Lus10014584 [exp]	0	1
AT5G20080			FAD/NAD(P)-binding oxidoreduct...		Lus10030059 [exp]	7.7	0.9069
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001752 [exp]	10.3	0.9222
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	13.9	0.9205
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011746 [exp]	14.0	0.9212
AT4G29520			unknown protein		Lus10032692 [exp]	18.2	0.8510
AT5G10130			Pollen Ole e 1 allergen and ex...		Lus10041707 [exp]	18.9	0.9207
AT5G45580	GARP		Homeodomain-like superfamily p...		Lus10010404 [exp]	23.2	0.9137
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Lus10034548 [exp]	25.0	0.9139
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	25.2	0.9196
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	25.7	0.9184

Compare expression of checked genes

Lus10014584 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.