Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56510 247 / 9e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032099 [exp] 520 / 0 AT3G56510 259 / 4e-85 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G341300 [exp] 243 / 4e-78 AT3G56510 275 / 5e-93 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10014585 pacid=23170933 polypeptide=Lus10014585 locus=Lus10014585.g ID=Lus10014585.BGIv1.0 annot-version=v1.0 ATGGCGAGGATGGATGCCGAAGAGCTCGAAGCTAATGTAATGAATTTTAAAGCTGATGGAAGTTCAAATGCCTGCAAAAGTAAGTCATCAAGCAGATTGA AAAGCAAAAGGAAGAAGCGGACACATGAGGTTGAAGTCATGGAAGTGGAGAGACATGTTAACGGTGGCGACATAGTAGATGGAGTTGATGTTGAAGAGAG CTGTATGAGGCTGAAATCTGGGGATAAGAAGAAAAGGATGGCAAAAACTGAAGCTGATGAGAAAGCTGACGAGGTGAAGAAGGGGAGCAAGAAAAAACAA CGCAGAGTATTAGAGGAAACCGAAGGGAATGAAAAAGAGGAGAATGTTGTTGATGATGATGATGATGGCTCACTGCAGGAAGAAGATCCAAGGGCTGAGG AAAGTAATCAGGAACTCATTGGAGATGATACTACTGATTATATTAGCAGTGAGCATCAATCATTAGTTAATGAGCAAAAGGGTAAGGAAAAGAAGAAGGG GAAGAGGCGCTTCTCAGAAGAAGCAGCTAAGGCTGGCAGCAGACTCGGTATTTGCTACCTAAGCCGAATCCCTCCTAACATGGATCATGTGATTCTTCGT CATATACTCTCACAGTACGCTAAAATCCAGAGGATCTATCTTGTACCAGAAGACTCAACTCCTATGGCATCTCAGAGAAAAGCTGCTAAACATAAGAGAC AATCCTTCTCCGAAGGGTGGGTTGAGTTTTCTGATAAAGGTGTGGCTAAAAGAGTTGCTAATATGTTAAATGGTGAACAAATGGGTGGGAAGAAAAGATC ACAATTCTACTACGACACATGGAACATCAAATACTTGAGTAAATTCAAGTGGGATGATCTGACAGAGGAAATCGCTATAAAGAGAGCCACCAGAGAACAG AAGCTGGCCTTGGAACTTTCTGCTGCGAGGAGGGAACGGGATTTCTACCTCTCGAAAGTCGAGAGATCAATTGCTTTGACTAATATAGAAGAACGGTTAA AGAAGGTAAAAGATTTGACTGTTACGAGCGATAGTTATCTTGGAATCAGAACCTATTGTTCATCAATAAACAGAAAGTTCGGGCCTTTAGTTCCTGCTAA CATGGTTTCCTTCTTTCTTCTGCAGAAGCAAAAGGTACCAGACCCACCGAAGAATGTCCGTAGATTCCAACAGAACAAGCCAGTCGCTGATAAAACGAAG GAGAATAAATCCAACATCTCTAAAGATTTCCTCACTGAGTTAAGAGGTGGTTTGGGGGAGTGTTTTGTGTGA
AA sequence Show only first row Show all	>Lus10014585 pacid=23170933 polypeptide=Lus10014585 locus=Lus10014585.g ID=Lus10014585.BGIv1.0 annot-version=v1.0 MARMDAEELEANVMNFKADGSSNACKSKSSSRLKSKRKKRTHEVEVMEVERHVNGGDIVDGVDVEESCMRLKSGDKKKRMAKTEADEKADEVKKGSKKKQ RRVLEETEGNEKEENVVDDDDDGSLQEEDPRAEESNQELIGDDTTDYISSEHQSLVNEQKGKEKKKGKRRFSEEAAKAGSRLGICYLSRIPPNMDHVILR HILSQYAKIQRIYLVPEDSTPMASQRKAAKHKRQSFSEGWVEFSDKGVAKRVANMLNGEQMGGKKRSQFYYDTWNIKYLSKFKWDDLTEEIAIKRATREQ KLALELSAARRERDFYLSKVERSIALTNIEERLKKVKDLTVTSDSYLGIRTYCSSINRKFGPLVPANMVSFFLLQKQKVPDPPKNVRRFQQNKPVADKTK ENKSNISKDFLTELRGGLGECFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56510			RNA-binding (RRM/RBD/RNP motif...		Lus10014585 [exp]	0	1
AT5G30490			unknown protein		Lus10017101 [exp]	1.0	0.8821
AT2G34160			Alba DNA/RNA-binding protein (...		Lus10002027 [exp]	5.8	0.8818
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Lus10018227 [exp]	6.9	0.8437
AT3G23390			Zinc-binding ribosomal protein...		Lus10040983 [exp]	8.3	0.8601
AT4G04190			unknown protein		Lus10020577 [exp]	10.2	0.8332
AT1G76010			Alba DNA/RNA-binding protein (...		Lus10017255 [exp]	10.2	0.8486
AT3G53740			Ribosomal protein L36e family ...		Lus10016501 [exp]	13.7	0.8422
AT3G52040			unknown protein		Lus10039586 [exp]	16.9	0.8360
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	17.7	0.8201
AT2G18196			Heavy metal transport/detoxifi...		Lus10010147 [exp]	20.0	0.8234

Compare expression of checked genes

Lus10014585 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.