Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19184 78 / 1e-16 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G42700 72 / 7e-15 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G58280 62 / 3e-11 B3 AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032098 [exp] 315 / 3e-104 AT3G19184 130 / 7e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10024689 [exp] 229 / 3e-72 AT5G42700 97 / 6e-23 AP2/B3-like transcriptional factor family protein (.1) Lus10019871 [exp] 122 / 8e-32 AT3G19184 116 / 2e-29 AP2/B3-like transcriptional factor family protein (.1) Lus10019872 [exp] 114 / 4e-29 AT3G19184 117 / 2e-30 AP2/B3-like transcriptional factor family protein (.1) Lus10035416 [exp] 109 / 4e-27 AT3G19184 129 / 2e-34 AP2/B3-like transcriptional factor family protein (.1) Lus10019873 [exp] 99 / 2e-23 AT5G42700 121 / 6e-32 AP2/B3-like transcriptional factor family protein (.1) Lus10014044 [exp] 87 / 7e-20 AT3G19184 250 / 2e-82 AP2/B3-like transcriptional factor family protein (.1) Lus10006483 [exp] 83 / 9e-19 AT5G42700 242 / 4e-81 AP2/B3-like transcriptional factor family protein (.1) Lus10019870 [exp] 83 / 4e-18 AT3G19184 253 / 8e-83 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G140700 [exp] 170 / 4e-50 AT3G19184 140 / 2e-38 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103300 [exp] 135 / 1e-36 AT3G19184 128 / 9e-34 AP2/B3-like transcriptional factor family protein (.1) Potri.007G042500 [exp] 117 / 6e-30 AT3G19184 134 / 6e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.005G137600 [exp] 103 / 7e-25 AT3G19184 135 / 2e-36 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141900 [exp] 98 / 2e-24 AT3G19184 137 / 7e-40 AP2/B3-like transcriptional factor family protein (.1) Potri.004G141800 [exp] 100 / 8e-24 AT3G19184 119 / 3e-30 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103400 [exp] 99 / 3e-23 AT3G19184 120 / 5e-31 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103200 [exp] 93 / 3e-22 AT3G19184 206 / 8e-66 AP2/B3-like transcriptional factor family protein (.1) Potri.009G103100 [exp] 90 / 5e-21 AT3G19184 232 / 5e-76 AP2/B3-like transcriptional factor family protein (.1) Potri.014G031600 [exp] 75 / 9e-16 AT5G42700 156 / 1e-47 AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10014586 pacid=23170945 polypeptide=Lus10014586 locus=Lus10014586.g ID=Lus10014586.BGIv1.0 annot-version=v1.0 ATGTTGTTGTTGGCCTTCTGCGAAGGGACATCATTAAGGAAGAAGTGGATTCTGCAACAACACCTTAGCAGCAAGACACGAAAGAGGGTGGCCGTAGAGA ATCTATCCAATGATGCTGAGGTTGAGAAACCTGTGCTATTAAAAGCACAAGAGGTTAAAGCTAGACTGCCGAAAAACTTCCCTACAATGATAAAAGTTAT GCCACCTTCACATGTTTCAGGTGGATTTAGCTTGGTAAGCAAAGTCTTGCGAAAGGGTTCGGTGCCAAGCATTTGCCTCATGAGGACACAATGCTCGACT TGGAAGACGAGGATGGAAAAATTCATACCGCCTCCGAATCTAGTTCATAGGCAAGGACTTAGCGGTGGATGGAGAGCCTTCTCTATTGATCACAAGTTAT TACCAGGAGATGTTCTGGTGTTTCAGTTAGTTGAGCCAACCAAGTTCAAGGTCTACATTGTGAGGGCAAGTTGTTCAGATGAAGTGGATGTTGCTCTTGG CCTTCTGCAAATGGACAGTGACGGCGAAAAAATGAATTCTGATAACCTTCCCAAAGCTTACAGAGAAAGCAACTCCGAAGGCCACCAGTCTGACGATGGA GAAGCTGATGATGGTTTCGGATTCGACATCTCAGATGGCATAAGAATGTTCGAATCAACAGCAGCCATCGATTTCGAGCAAGTGAAAAGCTTCGACGATT TTGACATCATGGTGAACGGCTTAGTCATAAACTGTGAGCTCTCCAAGCACCTTCAGCTTAAGTACTATGAACTATTGCAGCAGCCAGAAGCTGACTCGAT GGACCAATCAACACTTGTTTGTTACTAG
AA sequence Show only first row Show all	>Lus10014586 pacid=23170945 polypeptide=Lus10014586 locus=Lus10014586.g ID=Lus10014586.BGIv1.0 annot-version=v1.0 MLLLAFCEGTSLRKKWILQQHLSSKTRKRVAVENLSNDAEVEKPVLLKAQEVKARLPKNFPTMIKVMPPSHVSGGFSLVSKVLRKGSVPSICLMRTQCST WKTRMEKFIPPPNLVHRQGLSGGWRAFSIDHKLLPGDVLVFQLVEPTKFKVYIVRASCSDEVDVALGLLQMDSDGEKMNSDNLPKAYRESNSEGHQSDDG EADDGFGFDISDGIRMFESTAAIDFEQVKSFDDFDIMVNGLVINCELSKHLQLKYYELLQQPEADSMDQSTLVCY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014586 [exp]	0	1
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	3.9	0.8431
AT3G53010			Domain of unknown function (DU...		Lus10042636 [exp]	4.9	0.7192
AT5G67265			unknown protein		Lus10042633 [exp]	6.3	0.8375
					Lus10013098 [exp]	6.3	0.7283
					Lus10003442 [exp]	8.0	0.7040
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10026073 [exp]	8.7	0.6859
AT5G01300			PEBP (phosphatidylethanolamine...		Lus10003388 [exp]	10.2	0.7578
AT1G10385			Vps51/Vps67 family (components...		Lus10033648 [exp]	10.7	0.7567
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	18.6	0.6893
AT1G08315			ARM repeat superfamily protein...		Lus10006007 [exp]	22.2	0.7088

Compare expression of checked genes

Lus10014586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.